Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH6F0_RS02370 Genome accession   NZ_CP172390
Coordinates   454275..455243 (-) Length   322 a.a.
NCBI ID   WP_052774536.1    Uniprot ID   -
Organism   Campylobacter coli strain YH509     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449275..460243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F0_RS02350 (ACH6F0_02350) - 450790..451422 (-) 633 WP_002777778.1 membrane protein -
  ACH6F0_RS02355 (ACH6F0_02355) - 451588..452577 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  ACH6F0_RS02360 (ACH6F0_02360) - 452592..453347 (-) 756 WP_002780521.1 ABC transporter ATP-binding protein -
  ACH6F0_RS02365 (ACH6F0_02365) - 453344..454282 (-) 939 WP_002831256.1 iron chelate uptake ABC transporter family permease subunit -
  ACH6F0_RS02370 (ACH6F0_02370) ceuB 454275..455243 (-) 969 WP_052774536.1 ABC transporter permease Machinery gene
  ACH6F0_RS02375 (ACH6F0_02375) - 455376..456269 (-) 894 WP_234888882.1 phospholipase A -
  ACH6F0_RS02380 (ACH6F0_02380) - 456368..456943 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  ACH6F0_RS02385 (ACH6F0_02385) - 457006..458313 (+) 1308 WP_052774537.1 NFACT family protein -
  ACH6F0_RS02390 (ACH6F0_02390) - 458316..458654 (+) 339 WP_002777761.1 hypothetical protein -
  ACH6F0_RS02395 (ACH6F0_02395) - 458663..459388 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35491.39 Da        Isoelectric Point: 9.5069

>NTDB_id=1067211 ACH6F0_RS02370 WP_052774536.1 454275..455243(-) (ceuB) [Campylobacter coli strain YH509]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1067211 ACH6F0_RS02370 WP_052774536.1 454275..455243(-) (ceuB) [Campylobacter coli strain YH509]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGTGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.408

99.689

0.891

Multiple sequence alignment