Detailed information NTG0106720

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACAM57_RS04975
• Genome accession: NZ_AP028659
• Coordinates: 1020542..1021774 (-)
• Length: 410 a.a.
• NCBI ID: WP_369660889.1
• Uniprot ID: -
• Organism: Variovorax sp. V15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1015542..1026774

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAM57_RS04955 (GmRootV15_09720)	rpoH	1016092..1017033 (-)	942	WP_126025550.1	RNA polymerase sigma factor RpoH	-
ACAM57_RS04960 (GmRootV15_09730)	-	1017132..1017596 (-)	465	WP_369660887.1	DUF962 domain-containing protein	-
ACAM57_RS04965 (GmRootV15_09740)	-	1017782..1018513 (+)	732	WP_126025548.1	response regulator transcription factor	-
ACAM57_RS04970 (GmRootV15_09750)	-	1018510..1020318 (+)	1809	WP_369660888.1	hybrid sensor histidine kinase/response regulator	-
ACAM57_RS04975 (GmRootV15_09760)	pilA	1020542..1021774 (-)	1233	WP_369660889.1	signal recognition particle-docking protein FtsY	Machinery gene
ACAM57_RS04980 (GmRootV15_09770)	-	1021852..1023246 (+)	1395	WP_369662395.1	M16 family metallopeptidase	-
ACAM57_RS04985 (GmRootV15_09780)	-	1023277..1024638 (+)	1362	WP_369662396.1	M16 family metallopeptidase	-
ACAM57_RS04990 (GmRootV15_09790)	-	1024639..1025556 (-)	918	WP_369660890.1	LysR family transcriptional regulator ArgP	-
ACAM57_RS04995 (GmRootV15_09800)	-	1025645..1026283 (+)	639	WP_184640691.1	LysE/ArgO family amino acid transporter	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 42647.00 Da
• Isoelectric Point: 5.1767

>NTDB_id=106720 ACAM57_RS04975 WP_369660889.1 1020542..1021774(-) (pilA) [Variovorax sp. V15]
MFSFFKKKPPAEAPDAPAPTPPAPAAPAPEPAPARSVFSPSSWFGSKPAAEETPAPAPVAAPASVPVPSPAPAPATAPVV
PPSPAAAPSATPAPAPTPVTAAPVAEPVIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEELYEELESALLMADTGVK
ATEYLLDDLRGRVKRQMATDASQVKALLAETVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLADEGAS
VLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGRARGKDVVLVDTAGRLPTQLHLMDELKKIKRVV
TKADDTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFN
AREFAQALLG

Nucleotide

• Length: 1233 bp

>NTDB_id=106720 ACAM57_RS04975 WP_369660889.1 1020542..1021774(-) (pilA) [Variovorax sp. V15]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAGGCCCCCGACGCGCCGGCGCCCACCCCGCCGGCCCCGGCGGCGCC
TGCCCCGGAGCCCGCGCCCGCACGCTCGGTGTTTTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGGCGGCGGAAGAAACGC
CGGCGCCCGCACCGGTCGCCGCGCCAGCGTCCGTACCGGTTCCCTCCCCCGCTCCCGCACCGGCCACTGCCCCGGTCGTG
CCACCCTCCCCGGCCGCCGCTCCTTCCGCCACGCCTGCGCCCGCGCCGACTCCGGTGACCGCCGCGCCGGTTGCCGAACC
CGTGATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCCG
TGTTCGTCAATGCGAAGATCGACGAAGAGCTCTACGAGGAGCTCGAATCCGCCCTGCTGATGGCCGACACCGGCGTCAAG
GCGACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTGAAGCGCCAGATGGCCACCGATGCTTCGCAGGTCAAGGCACT
GCTGGCCGAGACAGTGGCCGACCTGCTGAAGCCGCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACGCCCACCGTGATCA
TGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCTGACGAAGGCGCCTCG
GTGCTGCTGGCCGCCGCCGACACCTTCCGGGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAATACCGTCGA
GATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGATGCGGTGAACGCCGGCCGGGCCCGCGGCAAGGACG
TGGTGCTGGTCGACACGGCCGGGCGCCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTC
ACCAAGGCCGACGACACCGCGCCGCACGAGGTACTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCTGGCGCAGGT
CAAGGCTTTCGACGAGACGCTGGGCCTCACGGGCCTGGTCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGT
GCGCCATCGCGCGGGAAAGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTGGAAACCTTCAAC
GCCCGCGAGTTCGCGCAGGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (128-190)

• SRP54-type protein, GTPase domain (SRP54) (210-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	100	0.517