Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACAM57_RS04035 Genome accession   NZ_AP028659
Coordinates   820274..820672 (+) Length   132 a.a.
NCBI ID   WP_093205631.1    Uniprot ID   -
Organism   Variovorax sp. V15     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 815274..825672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM57_RS04010 (GmRootV15_07850) purH 815379..816986 (+) 1608 WP_369660783.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  ACAM57_RS04015 (GmRootV15_07860) - 817065..817550 (-) 486 WP_184640819.1 hypothetical protein -
  ACAM57_RS04020 (GmRootV15_07870) hemL 817556..818842 (-) 1287 WP_369660784.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACAM57_RS04025 (GmRootV15_07880) - 818945..819907 (-) 963 WP_126023627.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACAM57_RS04030 (GmRootV15_07890) - 820019..820189 (+) 171 WP_007838397.1 rubredoxin -
  ACAM57_RS04035 (GmRootV15_07900) pilG 820274..820672 (+) 399 WP_093205631.1 PleD family two-component system response regulator Regulator
  ACAM57_RS04040 (GmRootV15_07910) - 820672..821037 (+) 366 WP_093304503.1 PleD family two-component system response regulator -
  ACAM57_RS04045 (GmRootV15_07920) - 821057..821590 (+) 534 WP_126023626.1 chemotaxis protein CheW -
  ACAM57_RS04050 (GmRootV15_07930) - 821633..823942 (+) 2310 WP_126023625.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14694.82 Da        Isoelectric Point: 7.3215

>NTDB_id=106719 ACAM57_RS04035 WP_093205631.1 820274..820672(+) (pilG) [Variovorax sp. V15]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=106719 ACAM57_RS04035 WP_093205631.1 820274..820672(+) (pilG) [Variovorax sp. V15]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTTGTCATTGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCCGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AACGTCCCGGTCGTCATGCTGTCGTCGAAAGACGGTGTATTCGACAAGGCACGCGGCCGCATGGTCGGTTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGTTGCTGCAGGCCGTGCAGCAGTTTGGCACCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment