Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH6FK_RS02040 Genome accession   NZ_CP172385
Coordinates   410483..411451 (-) Length   322 a.a.
NCBI ID   WP_395941418.1    Uniprot ID   -
Organism   Campylobacter coli strain YH511     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405483..416451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FK_RS02020 (ACH6FK_02020) - 406998..407630 (-) 633 WP_002777778.1 membrane protein -
  ACH6FK_RS02025 (ACH6FK_02025) - 407796..408785 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  ACH6FK_RS02030 (ACH6FK_02030) - 408800..409555 (-) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  ACH6FK_RS02035 (ACH6FK_02035) - 409552..410490 (-) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  ACH6FK_RS02040 (ACH6FK_02040) ceuB 410483..411451 (-) 969 WP_395941418.1 ABC transporter permease Machinery gene
  ACH6FK_RS02045 (ACH6FK_02045) - 411584..412477 (-) 894 WP_079749675.1 phospholipase A -
  ACH6FK_RS02050 (ACH6FK_02050) - 412576..413151 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  ACH6FK_RS02055 (ACH6FK_02055) - 413214..414521 (+) 1308 WP_002799193.1 NFACT RNA binding domain-containing protein -
  ACH6FK_RS02060 (ACH6FK_02060) - 414524..414862 (+) 339 WP_002806264.1 hypothetical protein -
  ACH6FK_RS02065 (ACH6FK_02065) - 414871..415596 (+) 726 WP_002822456.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35565.41 Da        Isoelectric Point: 9.5069

>NTDB_id=1067158 ACH6FK_RS02040 WP_395941418.1 410483..411451(-) (ceuB) [Campylobacter coli strain YH511]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSIV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1067158 ACH6FK_RS02040 WP_395941418.1 410483..411451(-) (ceuB) [Campylobacter coli strain YH511]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCATAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment