Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   ACH6FY_RS03655 Genome accession   NZ_CP172382
Coordinates   679585..680022 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain YH006     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674585..685022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FY_RS03635 (ACH6FY_03635) kdpD 675073..677004 (+) 1932 WP_002907893.1 sensor histidine kinase KdpD -
  ACH6FY_RS03640 (ACH6FY_03640) uvrB 676999..678972 (-) 1974 WP_002864735.1 excinuclease ABC subunit UvrB -
  ACH6FY_RS03645 (ACH6FY_03645) - 679126..679356 (+) 231 WP_395766381.1 hypothetical protein -
  ACH6FY_RS03650 (ACH6FY_03650) - 679346..679588 (+) 243 WP_002854947.1 hypothetical protein -
  ACH6FY_RS03655 (ACH6FY_03655) Cj0683 679585..680022 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACH6FY_RS03660 (ACH6FY_03660) priA 680004..681857 (+) 1854 WP_002866530.1 primosomal protein N' -
  ACH6FY_RS03665 (ACH6FY_03665) cipA 681867..683261 (-) 1395 WP_011812728.1 DUF2972 domain-containing protein -
  ACH6FY_RS03670 (ACH6FY_03670) ispG 683407..684480 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1067077 ACH6FY_RS03655 WP_002852324.1 679585..680022(+) (Cj0683) [Campylobacter jejuni strain YH006]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1067077 ACH6FY_RS03655 WP_002852324.1 679585..680022(+) (Cj0683) [Campylobacter jejuni strain YH006]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment