Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FG_RS07185 Genome accession   NZ_CP172381
Coordinates   1410594..1410905 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405594..1415905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FG_RS07165 (ACH6FG_07165) ctsE 1406463..1408022 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  ACH6FG_RS07170 (ACH6FG_07170) ctsX 1408012..1408599 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FG_RS07175 (ACH6FG_07175) ctsP 1408603..1409211 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FG_RS07180 (ACH6FG_07180) ctsD 1409204..1410616 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FG_RS07185 (ACH6FG_07185) ctsR 1410594..1410905 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FG_RS07190 (ACH6FG_07190) nifJ 1410929..1414489 (-) 3561 WP_002871858.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FG_RS07195 (ACH6FG_07195) - 1414582..1415223 (-) 642 WP_002871857.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1067067 ACH6FG_RS07185 WP_002855438.1 1410594..1410905(-) (ctsR) [Campylobacter jejuni strain YH007]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1067067 ACH6FG_RS07185 WP_002855438.1 1410594..1410905(-) (ctsR) [Campylobacter jejuni strain YH007]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment