Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6E8_RS08355 Genome accession   NZ_CP172380
Coordinates   1560097..1560408 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain YH008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555097..1565408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E8_RS08335 (ACH6E8_08335) ctsE 1555966..1557524 (-) 1559 Protein_1624 GspE/PulE family protein -
  ACH6E8_RS08340 (ACH6E8_08340) ctsX 1557514..1558101 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6E8_RS08345 (ACH6E8_08345) ctsP 1558105..1558713 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6E8_RS08350 (ACH6E8_08350) mshL 1558706..1560119 (-) 1414 Protein_1627 pilus (MSHA type) biogenesis protein MshL -
  ACH6E8_RS08355 (ACH6E8_08355) ctsR 1560097..1560408 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  ACH6E8_RS08360 (ACH6E8_08360) nifJ 1560432..1563992 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6E8_RS08365 (ACH6E8_08365) - 1564085..1564726 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=1067040 ACH6E8_RS08355 WP_015016496.1 1560097..1560408(-) (ctsR) [Campylobacter jejuni strain YH008]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1067040 ACH6E8_RS08355 WP_015016496.1 1560097..1560408(-) (ctsR) [Campylobacter jejuni strain YH008]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment