Detailed information NTG0106704

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACAM53_RS21335
• Genome accession: NZ_AP028657
• Coordinates: 4493977..4495221 (+)
• Length: 414 a.a.
• NCBI ID: WP_369648861.1
• Uniprot ID: -
• Organism: Variovorax sp. V11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4488977..4500221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAM53_RS21315 (GmRootV11_42330)	-	4489489..4490124 (-)	636	WP_369648857.1	LysE/ArgO family amino acid transporter	-
ACAM53_RS21320 (GmRootV11_42340)	-	4490205..4491122 (+)	918	WP_369648858.1	LysR family transcriptional regulator ArgP	-
ACAM53_RS21325 (GmRootV11_42350)	-	4491132..4492478 (-)	1347	WP_369648859.1	M16 family metallopeptidase	-
ACAM53_RS21330 (GmRootV11_42360)	-	4492496..4493947 (-)	1452	WP_369648860.1	M16 family metallopeptidase	-
ACAM53_RS21335 (GmRootV11_42370)	pilA	4493977..4495221 (+)	1245	WP_369648861.1	signal recognition particle-docking protein FtsY	Machinery gene
ACAM53_RS21340 (GmRootV11_42380)	-	4495246..4496307 (-)	1062	WP_369648862.1	hypothetical protein	-
ACAM53_RS21345 (GmRootV11_42390)	-	4496436..4498229 (-)	1794	WP_369648863.1	ATP-binding protein	-
ACAM53_RS21350 (GmRootV11_42400)	-	4498240..4498953 (-)	714	WP_369648864.1	response regulator	-
ACAM53_RS21355 (GmRootV11_42410)	-	4499119..4499583 (+)	465	WP_145740292.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 43155.90 Da
• Isoelectric Point: 5.8251

>NTDB_id=106704 ACAM53_RS21335 WP_369648861.1 4493977..4495221(+) (pilA) [Variovorax sp. V11]
MFSFFKKKPPAESPAAPAPSRAVEPVPAPEPAPAPAAAPARSVFSPSSWFGSKPAAEEAVPPPAAPDMAPPVAPPPAPAA
APHLAPVPAAPVPTPAVPTVPPPPPALATEVAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLMAD
AGVKATEYLLEDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLAS
EGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKI
KRVVTKADASAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDL
ETFNAREFAMALLG

Nucleotide

• Length: 1245 bp

>NTDB_id=106704 ACAM53_RS21335 WP_369648861.1 4493977..4495221(+) (pilA) [Variovorax sp. V11]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCACGGGCCGTCGAGCCGGTACC
TGCACCCGAGCCCGCGCCTGCGCCCGCTGCCGCACCGGCGCGCTCGGTGTTCTCTCCGTCGAGCTGGTTCGGCTCCAAGC
CTGCCGCAGAGGAAGCGGTGCCGCCGCCTGCAGCGCCAGACATGGCGCCCCCGGTCGCGCCCCCTCCGGCGCCAGCCGCG
GCGCCGCACCTCGCCCCCGTGCCTGCTGCACCGGTACCCACGCCGGCCGTTCCGACCGTCCCCCCGCCCCCGCCTGCCCT
CGCCACCGAGGTCGCCATGCCGGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTACGCAAGACCGGAACCG
GCATCCAGGCGGTGTTCGTCAACGCCCAGATCGACGAAGCGCTGTACGAGGAACTCGAATCGGCCCTGCTGATGGCCGAT
GCCGGCGTCAAGGCCACCGAGTACCTGCTCGAGGACCTGCGCGGCCGCGTCAAGCGCCAGATGGCCACCGACGCGGCGCA
AGTGAAGCGGCTGCTGGCCGATGCCATCACCGACCTGCTCCAGCCGCTCGAAAAGCCGCTGGTGATCGGCCAGTTCACGC
CGACGGTGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTGGCCAGC
GAGGGTGCCTCGGTGCTGCTGGCGGCGGCCGACACCTTCCGGGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCG
CAACACGGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCGGTCACGGCGGGCAAGGCGC
GCGGCAAGGACGTGGTACTGGTCGACACCGCAGGCCGGCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATC
AAGCGCGTCGTCACCAAGGCCGACGCCAGCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCAGAACGC
CCTGGCGCAGGTCAGGGCCTTCGACGAGACCCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACCGCCAAGG
GCGGCGTGCTCTGCGCGATTGCGCGCGAGCGGCCGATTCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTCGAAGACCTC
GAGACCTTCAACGCACGCGAGTTCGCCATGGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (214-413)

• SRP54-type protein, helical bundle domain (SRP54_N) (132-195)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.061	100	0.505