Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH6FR_RS06940 Genome accession   NZ_CP172379
Coordinates   1320311..1321279 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain YH013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315311..1326279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FR_RS06915 (ACH6FR_06915) cdsA 1316221..1316946 (-) 726 WP_002869324.1 phosphatidate cytidylyltransferase -
  ACH6FR_RS06920 (ACH6FR_06920) - 1316955..1317293 (-) 339 WP_002852397.1 hypothetical protein -
  ACH6FR_RS06925 (ACH6FR_06925) - 1317295..1318602 (-) 1308 WP_002864240.1 NFACT family protein -
  ACH6FR_RS06930 (ACH6FR_06930) mobA 1318664..1319239 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  ACH6FR_RS06935 (ACH6FR_06935) pldA 1319236..1320225 (+) 990 WP_002864239.1 phospholipase A -
  ACH6FR_RS06940 (ACH6FR_06940) ceuB 1320311..1321279 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  ACH6FR_RS06945 (ACH6FR_06945) ceuC 1321272..1322210 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  ACH6FR_RS06950 (ACH6FR_06950) ceuD 1322207..1322962 (+) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  ACH6FR_RS06955 (ACH6FR_06955) ceuB 1322975..1323967 (+) 993 WP_002884171.1 enterochelin ABC transporter substrate-binding protein CeuB -
  ACH6FR_RS06965 (ACH6FR_06965) - 1324193..1324747 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=1067005 ACH6FR_RS06940 WP_002874446.1 1320311..1321279(+) (ceuB) [Campylobacter jejuni strain YH013]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1067005 ACH6FR_RS06940 WP_002874446.1 1320311..1321279(+) (ceuB) [Campylobacter jejuni strain YH013]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTGCTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment