Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | ACH6FR_RS05675 | Genome accession | NZ_CP172379 |
| Coordinates | 1081334..1082293 (+) | Length | 319 a.a. |
| NCBI ID | WP_004308620.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain YH013 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1059980..1094513 | 1081334..1082293 | within | 0 |
Gene organization within MGE regions
Location: 1059980..1094513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FR_RS05555 (ACH6FR_05555) | pglI | 1059980..1060909 (-) | 930 | WP_002867212.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| ACH6FR_RS05560 (ACH6FR_05560) | pglH | 1060902..1061981 (-) | 1080 | WP_395941072.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| ACH6FR_RS05565 (ACH6FR_05565) | pglK | 1061978..1063672 (-) | 1695 | WP_002867213.1 | ABC-type lipopolysaccharide transporter PglK | - |
| ACH6FR_RS05570 (ACH6FR_05570) | galE | 1063666..1064652 (-) | 987 | WP_032587260.1 | UDP-glucose 4-epimerase GalE | - |
| ACH6FR_RS05575 (ACH6FR_05575) | - | 1064711..1065505 (-) | 795 | WP_002860221.1 | 3'-5' exonuclease | - |
| ACH6FR_RS05580 (ACH6FR_05580) | waaC | 1065572..1066600 (+) | 1029 | WP_395941073.1 | lipopolysaccharide heptosyltransferase I | - |
| ACH6FR_RS05585 (ACH6FR_05585) | htrB | 1066590..1067468 (+) | 879 | WP_052789826.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| ACH6FR_RS05590 (ACH6FR_05590) | - | 1067465..1068166 (+) | 702 | WP_002869594.1 | glycosyltransferase family 2 protein | - |
| ACH6FR_RS05595 (ACH6FR_05595) | rfbA | 1068177..1069055 (+) | 879 | WP_002869595.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| ACH6FR_RS05600 (ACH6FR_05600) | rfbB | 1069055..1070086 (+) | 1032 | WP_002860226.1 | dTDP-glucose 4,6-dehydratase | - |
| ACH6FR_RS05605 (ACH6FR_05605) | wlaRA | 1070089..1070538 (+) | 450 | WP_002912325.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| ACH6FR_RS05610 (ACH6FR_05610) | wlaRB | 1070535..1070939 (+) | 405 | WP_002860228.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| ACH6FR_RS05615 (ACH6FR_05615) | - | 1070929..1071372 (+) | 444 | WP_020247173.1 | N-acetyltransferase | - |
| ACH6FR_RS05620 (ACH6FR_05620) | - | 1071394..1071922 (+) | 529 | Protein_1086 | GNAT family N-acetyltransferase; N-acetyltransferase | - |
| ACH6FR_RS05625 (ACH6FR_05625) | - | 1071943..1072200 (+) | 258 | Protein_1087 | hypothetical protein | - |
| ACH6FR_RS05630 (ACH6FR_05630) | - | 1072219..1073283 (+) | 1065 | WP_002869599.1 | glycosyltransferase family A protein | - |
| ACH6FR_RS05635 (ACH6FR_05635) | - | 1073296..1074348 (+) | 1053 | WP_052789825.1 | glycosyltransferase family 2 protein | - |
| ACH6FR_RS05640 (ACH6FR_05640) | wlaRG | 1074314..1075399 (+) | 1086 | WP_025998025.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| ACH6FR_RS05645 (ACH6FR_05645) | - | 1075426..1076685 (-) | 1260 | WP_002869603.1 | DUF2972 domain-containing protein | - |
| ACH6FR_RS05650 (ACH6FR_05650) | - | 1076682..1077705 (-) | 1024 | Protein_1092 | hypothetical protein | - |
| ACH6FR_RS05655 (ACH6FR_05655) | - | 1077776..1078549 (+) | 774 | WP_002869611.1 | glycosyltransferase family 25 protein | - |
| ACH6FR_RS05660 (ACH6FR_05660) | wlaTB | 1078542..1079498 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| ACH6FR_RS05665 (ACH6FR_05665) | yibB | 1079495..1080454 (+) | 960 | WP_002869615.1 | protein YibB | - |
| ACH6FR_RS05670 (ACH6FR_05670) | waaV | 1080457..1081275 (-) | 819 | WP_395941074.1 | glycosyltransferase family 2 protein | - |
| ACH6FR_RS05675 (ACH6FR_05675) | waaF | 1081334..1082293 (+) | 960 | WP_004308620.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| ACH6FR_RS05680 (ACH6FR_05680) | gmhA | 1082274..1082834 (-) | 561 | WP_002869619.1 | D-sedoheptulose 7-phosphate isomerase | - |
| ACH6FR_RS05685 (ACH6FR_05685) | rfaE1 | 1082831..1084216 (-) | 1386 | WP_002867399.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| ACH6FR_RS05690 (ACH6FR_05690) | rfaD | 1084209..1085162 (-) | 954 | WP_002867398.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| ACH6FR_RS05695 (ACH6FR_05695) | gmhB | 1085163..1085724 (-) | 562 | Protein_1101 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| ACH6FR_RS05700 (ACH6FR_05700) | - | 1085805..1086107 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| ACH6FR_RS05705 (ACH6FR_05705) | ccoS | 1086130..1086336 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| ACH6FR_RS05710 (ACH6FR_05710) | - | 1086333..1088690 (-) | 2358 | WP_079268904.1 | heavy metal translocating P-type ATPase | - |
| ACH6FR_RS05715 (ACH6FR_05715) | rho | 1088799..1090097 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| ACH6FR_RS05720 (ACH6FR_05720) | dnaX | 1090101..1091630 (+) | 1530 | WP_044258566.1 | DNA polymerase III subunit gamma/tau | - |
| ACH6FR_RS05725 (ACH6FR_05725) | - | 1091627..1092148 (-) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| ACH6FR_RS05730 (ACH6FR_05730) | copA | 1092220..1094319 (-) | 2100 | WP_395941075.1 | copper-translocating P-type ATPase CopA | - |
| ACH6FR_RS05735 (ACH6FR_05735) | - | 1094319..1094513 (-) | 195 | WP_002859258.1 | heavy-metal-associated domain-containing protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36751.47 Da Isoelectric Point: 10.3520
>NTDB_id=1067000 ACH6FR_RS05675 WP_004308620.1 1081334..1082293(+) (waaF) [Campylobacter jejuni strain YH013]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFNQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEAKNLLKNPHL
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFNQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEAKNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1067000 ACH6FR_RS05675 WP_004308620.1 1081334..1082293(+) (waaF) [Campylobacter jejuni strain YH013]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAACCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAAAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAACCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAAAAATTTACTTAAAAACCCTCATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.671 |
100 |
0.947 |