Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   ACH6FR_RS03345 Genome accession   NZ_CP172379
Coordinates   633108..633545 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain YH013     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628108..638545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FR_RS03320 (ACH6FR_03320) - 628604..629755 (+) 1152 WP_234744381.1 sensor histidine kinase KdpD -
  ACH6FR_RS03325 (ACH6FR_03325) - 629779..630420 (+) 642 WP_234744382.1 DUF4118 domain-containing protein -
  ACH6FR_RS03330 (ACH6FR_03330) uvrB 630522..632495 (-) 1974 WP_002888183.1 excinuclease ABC subunit UvrB -
  ACH6FR_RS03335 (ACH6FR_03335) - 632649..632879 (+) 231 WP_002852327.1 hypothetical protein -
  ACH6FR_RS03340 (ACH6FR_03340) - 632869..633111 (+) 243 WP_002854947.1 hypothetical protein -
  ACH6FR_RS03345 (ACH6FR_03345) Cj0683 633108..633545 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACH6FR_RS03350 (ACH6FR_03350) priA 633527..635380 (+) 1854 WP_002888182.1 primosomal protein N' -
  ACH6FR_RS03355 (ACH6FR_03355) cipA 635390..636784 (-) 1395 WP_002888181.1 DUF2972 domain-containing protein -
  ACH6FR_RS03360 (ACH6FR_03360) ispG 636930..638003 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1066995 ACH6FR_RS03345 WP_002852324.1 633108..633545(+) (Cj0683) [Campylobacter jejuni strain YH013]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1066995 ACH6FR_RS03345 WP_002852324.1 633108..633545(+) (Cj0683) [Campylobacter jejuni strain YH013]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment