Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   EN73_RS04670 Genome accession   NZ_CP007632
Coordinates   886102..889335 (+) Length   1077 a.a.
NCBI ID   WP_000772305.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NGBS572     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881102..894335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EN73_RS04655 (EN73_04785) - 881974..882494 (+) 521 Protein_859 GNAT family N-acetyltransferase -
  EN73_RS04660 (EN73_04790) pheT 882548..884953 (+) 2406 WP_000961583.1 phenylalanine--tRNA ligase subunit beta -
  EN73_RS04665 (EN73_04795) - 885022..885924 (-) 903 WP_000686762.1 neutral zinc metallopeptidase -
  EN73_RS04670 (EN73_04800) rexB 886102..889335 (+) 3234 WP_000772305.1 ATP-dependent nuclease subunit B Machinery gene
  EN73_RS04675 (EN73_04805) rexA 889325..892948 (+) 3624 WP_000143239.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EN73_RS04680 (EN73_04810) - 892961..893878 (+) 918 WP_000634649.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 1077 a.a.        Molecular weight: 123954.65 Da        Isoelectric Point: 5.2243

>NTDB_id=106697 EN73_RS04670 WP_000772305.1 886102..889335(+) (rexB) [Streptococcus agalactiae strain NGBS572]
MKLLYTDINHDMTEILVNQAAHAAEAGWRIFYIAPNSLSFEKERAVLETLPQEASFAITITRFAQLARYFTLNQPNQKES
LNDIGLAMIFYRALASFEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYLHSPEKFEDLLAIFLVVSDLLRE
GEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSLSSRCQEIIIGAYASQKAYKTNFTNGNIYSAG
VDFLRYLATTFQTKPEFILSKWESKSGFEMISKNIEGKHDFTNSSHILDDTAKDCITIWECINQKDEVEHVARAIRQKLY
QGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIGQ
DDLDYFEAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQFMFFLTQVGLSDNLS
RLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQF
VYALGMTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQM
SPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVAVRYLRRQLTSKGIEIPII
TDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIE
SFEEKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIKINGIIDRID
RLSDGSLGVVDYKSSAQKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPPIFGAMYLHMQEPRQDLSKIKNLDDLVTKNH
QALTYKGLFSEAEKEFLANGKYHLKDSLYSEAEIAILQAHNQSLYKKASETIKSGKFLINPYTEDAKTVDGDQFKSITGF
EADRHMARARALYKLPAKEKRQGFLTLMQQEEENDDL

Nucleotide


Download         Length: 3234 bp        

>NTDB_id=106697 EN73_RS04670 WP_000772305.1 886102..889335(+) (rexB) [Streptococcus agalactiae strain NGBS572]
ATGAAATTACTTTATACTGATATTAATCATGATATGACAGAAATCTTAGTCAATCAGGCCGCGCATGCTGCTGAAGCTGG
ATGGCGTATTTTTTATATTGCTCCAAACTCTTTATCTTTTGAAAAGGAGCGTGCAGTATTAGAGACCCTTCCTCAAGAAG
CCTCTTTTGCTATTACAATTACTCGCTTTGCTCAATTGGCACGTTATTTTACTTTAAACCAGCCTAATCAAAAAGAAAGT
TTAAACGATATTGGATTAGCAATGATCTTTTATCGTGCTTTAGCAAGTTTTGAAGATGGACAATTAAAAGTTTTTGGACG
ATTGAAGCAAGATGCTTCCTTTATCAGTCAATTGGTAGACCTATACAAAGAATTGCAGACAGCAAATCTGAGTATTTTAG
ATTTAAAATATTTACATTCTCCTGAAAAATTTGAAGATCTATTAGCTATTTTTCTAGTGGTTTCAGATCTTTTAAGAGAA
GGAGAATACGACAATCAATCTAAAATTGCCTTTTTTACAGAACAAGTAAGGTCAGGACAGCTAGATGTGGATTTAAAGAA
CACTATCCTTATAGTCGATGGTTTTACCCGTTTCTCAGCTGAAGAAGAAGCTTTAATTAAAAGTCTGAGTTCACGTTGTC
AAGAGATTATCATCGGAGCTTATGCTAGCCAAAAAGCGTATAAGACTAACTTTACCAATGGAAATATTTATTCTGCAGGG
GTTGATTTTTTAAGATATCTAGCAACGACATTTCAAACAAAACCAGAATTTATCTTGTCTAAGTGGGAAAGTAAGTCTGG
TTTTGAAATGATTTCGAAAAATATCGAAGGTAAACATGATTTTACAAATAGTAGTCACATTTTAGACGACACTGCTAAAG
ATTGTATAACAATTTGGGAGTGCATTAATCAAAAAGATGAAGTGGAACATGTGGCTAGAGCTATACGTCAGAAACTTTAT
CAGGGATATCGCTACAAAGATATTTTAGTTTTACTAGGAGATGTAGATAGTTATAAACTACAATTAAGTAAGATTTTTGA
ACAGTATGATATTCCTTATTATTTCGGTAAAGCTGAAACAATGGCTGCGCACCCTTTAGTTCATTTTATGGATTCCTTGT
CGCGAATAAAACGTTATCGATTTAGAGCTGAAGATGTTTTAAATCTTTTTAAGACAGGTATTTATGGAGAGATTGGTCAA
GATGATTTAGATTATTTTGAAGCTTATATCTCATATGCAGATATTAAAGGTCCTAAGAAGTTCTTTACAGATTTTGTTGT
GGGGGCTAAAAAATTTGATTTAGGGCGTCTTAACACTATTCGTCAGTCCCTCCTTACTCCACTGGAAAGTTTTGTTAAAA
CGAAAAAACAAGACGGTATAAAAACACTCAACCAATTCATGTTTTTCCTTACTCAGGTAGGTTTGAGTGACAATTTATCG
CGATTAGTTGGTCAAATGTCTGAAAATGAACAAGAAAAACATCAAGAAGTTTGGAAAACATTTACAGATATTTTAGAGCA
GTTTCAAACAATATTTGGTCAAGAAAAATTAAATTTAGACGAATTTTTATCGTTATTAAATTCAGGTATGATGCAAGCCG
AGTATCGTATGGTCCCTGCTACTGTTGATGTGGTTACTGTTAAGTCTTACGACTTGGTAGAACCACATAGTAATCAATTT
GTCTATGCCCTAGGCATGACACAATCACATTTTCCAAAGATTGCTCAAAACAAATCTTTAATATCTGATATTGAACGTCA
GCTTATAAATGATGCCAATGACACTGATGGTCATTTTGACATTATGACGCGAGAAAATTTGAAGAAAAACCATTTTGCTG
CTCTCTCTCTTTTTAATGCTGCTAAACAAGCATTAGTGTTGACTATACCACAATTATTGAATGAGTCTGAAGATCAGATG
TCACCATATCTTGTCGAACTAAGAGATATAGGTGTTCCTTTTAATCATAAAGGACGCCAATCGTTAAAAGAAGAAGCTGA
TAATATTGGGAATTACAAAGCTTTATTATCGCGTGTTGTTGACTTGTATCGCTCTGCTATTGACAAAGAGATGACTAAAG
AAGAACAAACTTTTTGGTCAGTTGCTGTTCGTTATTTGCGTCGTCAATTAACTTCTAAAGGGATCGAGATACCAATAATT
ACAGATAGTCTTGATACTGTGACAGTTTCATCAGATGTGATGACCAGACGCTTCCCAGAAGATCACCCACTTAAATTATC
CTCATCTGCTTTGACAACTTTTTATAATAATCAATATAAGTATTTTTTACAATATGTGTTAGGTTTGGAAGAACAAGACT
CAATTCATCCAGATATGCGGCACCACGGAACGTATCTTCATCGTGTTTTTGAAATTCTGATGAAAAACCAAGGGATAGAA
TCTTTTGAAGAGAAACTCAACTCTGCAATTAATAAAACCAATCAAGAAGATGTTTTCAAATCCTTGTATTCAGAAGATGC
AGAAAGTCGTTATTCTTTAGAAATTTTAGAAGATATCGCGCGTGCAACTGCAACCATATTACGACAAGATAGTCAGATGA
CTGTTGAAAGTGAAGAAGAACGATTTGAACTAATGATTGATAATACTATAAAAATTAACGGTATTATTGACCGTATCGAT
CGTTTATCTGATGGTTCTTTGGGTGTCGTGGACTATAAATCAAGCGCTCAAAAATTCGATATCCAAAAATTTTATAACGG
TCTAAGTCCACAATTAGTCACCTACATTGATGCTATCAGTCGTGACAAGGAAGTTGAACAAAAACCACCGATTTTTGGAG
CTATGTACTTACATATGCAAGAACCTAGACAAGACTTGTCTAAAATTAAAAATTTAGATGATTTAGTAACAAAAAATCAT
CAAGCTTTAACTTATAAAGGATTATTTTCAGAAGCCGAAAAAGAATTCTTAGCAAATGGGAAATACCATCTCAAAGATTC
CCTTTATTCAGAGGCTGAAATTGCTATTTTACAAGCACATAATCAATCGCTTTACAAAAAAGCATCTGAGACTATTAAGT
CAGGTAAGTTTTTGATCAATCCATATACAGAAGATGCTAAAACAGTTGACGGTGATCAGTTTAAGAGTATTACGGGGTTC
GAGGCGGATAGGCATATGGCACGTGCCAGAGCGCTTTATAAATTACCTGCTAAGGAAAAACGTCAAGGTTTCTTAACATT
AATGCAGCAAGAGGAGGAAAATGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.03

99.907

0.43