Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | ACH6FX_RS05630 | Genome accession | NZ_CP172375 |
| Coordinates | 1088035..1088994 (+) | Length | 319 a.a. |
| NCBI ID | WP_002852903.1 | Uniprot ID | A0A5Y6P8U5 |
| Organism | Campylobacter jejuni strain YH017 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1070367..1098337 | 1088035..1088994 | within | 0 |
Gene organization within MGE regions
Location: 1070367..1098337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FX_RS05540 (ACH6FX_05540) | pglI | 1070367..1071296 (-) | 930 | WP_002852770.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| ACH6FX_RS05545 (ACH6FX_05545) | pglH | 1071289..1072368 (-) | 1080 | WP_079264866.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| ACH6FX_RS05550 (ACH6FX_05550) | pglK | 1072365..1074059 (-) | 1695 | WP_002858308.1 | ABC-type lipopolysaccharide transporter PglK | - |
| ACH6FX_RS05555 (ACH6FX_05555) | galE | 1074053..1075039 (-) | 987 | WP_002893768.1 | UDP-glucose 4-epimerase GalE | - |
| ACH6FX_RS05560 (ACH6FX_05560) | - | 1075097..1075891 (-) | 795 | WP_002893767.1 | 3'-5' exonuclease | - |
| ACH6FX_RS05565 (ACH6FX_05565) | waaC | 1075957..1076985 (+) | 1029 | WP_002893766.1 | lipopolysaccharide heptosyltransferase I | - |
| ACH6FX_RS05570 (ACH6FX_05570) | htrB | 1076975..1077862 (+) | 888 | WP_002893765.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| ACH6FX_RS05575 (ACH6FX_05575) | - | 1077859..1079406 (+) | 1548 | WP_002893763.1 | glycosyltransferase | - |
| ACH6FX_RS05580 (ACH6FX_05580) | - | 1079410..1080594 (+) | 1185 | WP_002907417.1 | glycosyltransferase family 2 protein | - |
| ACH6FX_RS05585 (ACH6FX_05585) | - | 1080650..1081708 (+) | 1059 | WP_002874244.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| ACH6FX_RS05590 (ACH6FX_05590) | - | 1081680..1082573 (-) | 894 | WP_002874243.1 | glycosyltransferase family 2 protein | - |
| ACH6FX_RS05595 (ACH6FX_05595) | - | 1082662..1083537 (+) | 876 | WP_002874242.1 | alpha-2,3-sialyltransferase | - |
| ACH6FX_RS05600 (ACH6FX_05600) | neuB | 1083538..1084578 (+) | 1041 | WP_002894656.1 | N-acetylneuraminate synthase | - |
| ACH6FX_RS05605 (ACH6FX_05605) | neuC | 1084575..1085693 (+) | 1119 | WP_395766296.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| ACH6FX_RS05610 (ACH6FX_05610) | - | 1085690..1086355 (+) | 666 | WP_002894653.1 | cytidylyltransferase domain-containing protein | - |
| ACH6FX_RS05615 (ACH6FX_05615) | - | 1086343..1086516 (+) | 174 | WP_002896733.1 | hypothetical protein | - |
| ACH6FX_RS05620 (ACH6FX_05620) | - | 1086558..1087172 (+) | 615 | WP_002926085.1 | CatB-related O-acetyltransferase | - |
| ACH6FX_RS05625 (ACH6FX_05625) | waaV | 1087164..1087976 (-) | 813 | WP_002878817.1 | glycosyltransferase family 2 protein | - |
| ACH6FX_RS05630 (ACH6FX_05630) | waaF | 1088035..1088994 (+) | 960 | WP_002852903.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| ACH6FX_RS05635 (ACH6FX_05635) | gmhA | 1088975..1089535 (-) | 561 | WP_002852775.1 | D-sedoheptulose 7-phosphate isomerase | - |
| ACH6FX_RS05640 (ACH6FX_05640) | rfaE1 | 1089532..1090917 (-) | 1386 | WP_002852777.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| ACH6FX_RS05645 (ACH6FX_05645) | rfaD | 1090910..1091863 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| ACH6FX_RS05650 (ACH6FX_05650) | gmhB | 1091864..1092424 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| ACH6FX_RS05655 (ACH6FX_05655) | - | 1092506..1092808 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| ACH6FX_RS05660 (ACH6FX_05660) | ccoS | 1092831..1093037 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| ACH6FX_RS05665 (ACH6FX_05665) | - | 1093034..1095391 (-) | 2358 | WP_075867355.1 | heavy metal translocating P-type ATPase | - |
| ACH6FX_RS05670 (ACH6FX_05670) | rho | 1095500..1096798 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| ACH6FX_RS05675 (ACH6FX_05675) | dnaX | 1096802..1098337 (+) | 1536 | WP_002858347.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36766.44 Da Isoelectric Point: 10.4054
>NTDB_id=1066946 ACH6FX_RS05630 WP_002852903.1 1088035..1088994(+) (waaF) [Campylobacter jejuni strain YH017]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1066946 ACH6FX_RS05630 WP_002852903.1 1088035..1088994(+) (waaF) [Campylobacter jejuni strain YH017]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.984 |
100 |
0.95 |