Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FJ_RS07775 Genome accession   NZ_CP172372
Coordinates   1486756..1487067 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH018     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481756..1492067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FJ_RS07755 (ACH6FJ_07745) ctsE 1482625..1484184 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  ACH6FJ_RS07760 (ACH6FJ_07750) ctsX 1484174..1484761 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FJ_RS07765 (ACH6FJ_07755) ctsP 1484765..1485373 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FJ_RS07770 (ACH6FJ_07760) ctsD 1485366..1486778 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FJ_RS07775 (ACH6FJ_07765) ctsR 1486756..1487067 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FJ_RS07780 (ACH6FJ_07770) nifJ 1487091..1490651 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FJ_RS07785 (ACH6FJ_07775) - 1490744..1491384 (-) 641 Protein_1514 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1066932 ACH6FJ_RS07775 WP_002855438.1 1486756..1487067(-) (ctsR) [Campylobacter jejuni strain YH018]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1066932 ACH6FJ_RS07775 WP_002855438.1 1486756..1487067(-) (ctsR) [Campylobacter jejuni strain YH018]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment