Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | ACH6FJ_RS05560 | Genome accession | NZ_CP172372 |
| Coordinates | 1047732..1048034 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain YH018 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1042732..1053034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FJ_RS05535 (ACH6FJ_05525) | rpsR | 1043094..1043354 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| ACH6FJ_RS05540 (ACH6FJ_05530) | lon | 1043415..1045790 (-) | 2376 | WP_395766152.1 | endopeptidase La | - |
| ACH6FJ_RS05545 (ACH6FJ_05535) | - | 1045807..1046454 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| ACH6FJ_RS05550 (ACH6FJ_05540) | fliW | 1046615..1047004 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| ACH6FJ_RS05555 (ACH6FJ_05545) | proC | 1047004..1047735 (+) | 732 | WP_002858388.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| ACH6FJ_RS05560 (ACH6FJ_05550) | ctsT | 1047732..1048034 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| ACH6FJ_RS05565 (ACH6FJ_05555) | - | 1048031..1048693 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| ACH6FJ_RS05570 (ACH6FJ_05560) | - | 1048690..1049142 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| ACH6FJ_RS05575 (ACH6FJ_05565) | hemD | 1049139..1049768 (-) | 630 | WP_002858312.1 | uroporphyrinogen-III synthase | - |
| ACH6FJ_RS05580 (ACH6FJ_05570) | thiE | 1049746..1050378 (-) | 633 | WP_002858441.1 | thiamine phosphate synthase | - |
| ACH6FJ_RS05585 (ACH6FJ_05575) | thiD | 1050368..1051180 (-) | 813 | WP_002882602.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACH6FJ_RS05590 (ACH6FJ_05580) | - | 1051177..1051863 (-) | 687 | WP_002858132.1 | endonuclease III domain-containing protein | - |
| ACH6FJ_RS05595 (ACH6FJ_05585) | - | 1051860..1052621 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=1066917 ACH6FJ_RS05560 WP_002853046.1 1047732..1048034(+) (ctsT) [Campylobacter jejuni strain YH018]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=1066917 ACH6FJ_RS05560 WP_002853046.1 1047732..1048034(+) (ctsT) [Campylobacter jejuni strain YH018]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |