Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FP_RS07490 Genome accession   NZ_CP172368
Coordinates   1451961..1452272 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH019     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446961..1457272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FP_RS07470 (ACH6FP_07470) ctsE 1447830..1449389 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  ACH6FP_RS07475 (ACH6FP_07475) ctsX 1449379..1449966 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FP_RS07480 (ACH6FP_07480) ctsP 1449970..1450578 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FP_RS07485 (ACH6FP_07485) ctsD 1450571..1451983 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FP_RS07490 (ACH6FP_07490) ctsR 1451961..1452272 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FP_RS07495 (ACH6FP_07495) nifJ 1452296..1455856 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FP_RS07500 (ACH6FP_07500) - 1455949..1456590 (-) 642 WP_002856102.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1066905 ACH6FP_RS07490 WP_002855438.1 1451961..1452272(-) (ctsR) [Campylobacter jejuni strain YH019]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1066905 ACH6FP_RS07490 WP_002855438.1 1451961..1452272(-) (ctsR) [Campylobacter jejuni strain YH019]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment