Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | ACH6FP_RS05940 | Genome accession | NZ_CP172368 |
| Coordinates | 1137278..1138237 (+) | Length | 319 a.a. |
| NCBI ID | WP_002852903.1 | Uniprot ID | A0A5Y6P8U5 |
| Organism | Campylobacter jejuni strain YH019 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1119610..1147580 | 1137278..1138237 | within | 0 |
Gene organization within MGE regions
Location: 1119610..1147580
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FP_RS05850 (ACH6FP_05850) | pglI | 1119610..1120539 (-) | 930 | WP_002852770.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| ACH6FP_RS05855 (ACH6FP_05855) | pglH | 1120532..1121611 (-) | 1080 | WP_079264866.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| ACH6FP_RS05860 (ACH6FP_05860) | pglK | 1121608..1123302 (-) | 1695 | WP_002858308.1 | ABC-type lipopolysaccharide transporter PglK | - |
| ACH6FP_RS05865 (ACH6FP_05865) | galE | 1123296..1124282 (-) | 987 | WP_002893768.1 | UDP-glucose 4-epimerase GalE | - |
| ACH6FP_RS05870 (ACH6FP_05870) | - | 1124340..1125134 (-) | 795 | WP_002893767.1 | 3'-5' exonuclease | - |
| ACH6FP_RS05875 (ACH6FP_05875) | waaC | 1125200..1126228 (+) | 1029 | WP_002893766.1 | lipopolysaccharide heptosyltransferase I | - |
| ACH6FP_RS05880 (ACH6FP_05880) | htrB | 1126218..1127105 (+) | 888 | WP_002893765.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| ACH6FP_RS05885 (ACH6FP_05885) | - | 1127102..1128649 (+) | 1548 | WP_002893763.1 | glycosyltransferase | - |
| ACH6FP_RS05890 (ACH6FP_05890) | - | 1128653..1129837 (+) | 1185 | WP_002907417.1 | glycosyltransferase family 2 protein | - |
| ACH6FP_RS05895 (ACH6FP_05895) | - | 1129893..1130951 (+) | 1059 | WP_002874244.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| ACH6FP_RS05900 (ACH6FP_05900) | - | 1130923..1131816 (-) | 894 | WP_002874243.1 | glycosyltransferase family 2 protein | - |
| ACH6FP_RS05905 (ACH6FP_05905) | - | 1131905..1132780 (+) | 876 | WP_002874242.1 | alpha-2,3-sialyltransferase | - |
| ACH6FP_RS05910 (ACH6FP_05910) | neuB | 1132781..1133821 (+) | 1041 | WP_002894656.1 | N-acetylneuraminate synthase | - |
| ACH6FP_RS05915 (ACH6FP_05915) | neuC | 1133818..1134936 (+) | 1119 | WP_395766296.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| ACH6FP_RS05920 (ACH6FP_05920) | - | 1134933..1135598 (+) | 666 | WP_002894653.1 | cytidylyltransferase domain-containing protein | - |
| ACH6FP_RS05925 (ACH6FP_05925) | - | 1135586..1135759 (+) | 174 | WP_002896733.1 | hypothetical protein | - |
| ACH6FP_RS05930 (ACH6FP_05930) | - | 1135801..1136415 (+) | 615 | WP_002926085.1 | CatB-related O-acetyltransferase | - |
| ACH6FP_RS05935 (ACH6FP_05935) | waaV | 1136407..1137219 (-) | 813 | WP_002878817.1 | glycosyltransferase family 2 protein | - |
| ACH6FP_RS05940 (ACH6FP_05940) | waaF | 1137278..1138237 (+) | 960 | WP_002852903.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| ACH6FP_RS05945 (ACH6FP_05945) | gmhA | 1138218..1138778 (-) | 561 | WP_002852775.1 | D-sedoheptulose 7-phosphate isomerase | - |
| ACH6FP_RS05950 (ACH6FP_05950) | rfaE1 | 1138775..1140160 (-) | 1386 | WP_002852777.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| ACH6FP_RS05955 (ACH6FP_05955) | rfaD | 1140153..1141106 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| ACH6FP_RS05960 (ACH6FP_05960) | gmhB | 1141107..1141667 (-) | 561 | WP_002878815.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| ACH6FP_RS05965 (ACH6FP_05965) | - | 1141749..1142051 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| ACH6FP_RS05970 (ACH6FP_05970) | ccoS | 1142074..1142280 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| ACH6FP_RS05975 (ACH6FP_05975) | - | 1142277..1144634 (-) | 2358 | WP_075867355.1 | heavy metal translocating P-type ATPase | - |
| ACH6FP_RS05980 (ACH6FP_05980) | rho | 1144743..1146041 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| ACH6FP_RS05985 (ACH6FP_05985) | dnaX | 1146045..1147580 (+) | 1536 | WP_002858347.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36766.44 Da Isoelectric Point: 10.4054
>NTDB_id=1066892 ACH6FP_RS05940 WP_002852903.1 1137278..1138237(+) (waaF) [Campylobacter jejuni strain YH019]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1066892 ACH6FP_RS05940 WP_002852903.1 1137278..1138237(+) (waaF) [Campylobacter jejuni strain YH019]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.984 |
100 |
0.95 |