Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   ACH6FI_RS08635 Genome accession   NZ_CP172364
Coordinates   1618790..1619971 (-) Length   393 a.a.
NCBI ID   WP_057041182.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613790..1624971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FI_RS08605 (ACH6FI_08600) - 1614334..1614675 (+) 342 WP_002784057.1 hypothetical protein -
  ACH6FI_RS08610 (ACH6FI_08605) flgM 1614738..1614935 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACH6FI_RS08615 (ACH6FI_08610) - 1614978..1615412 (+) 435 WP_395766418.1 flagellar protein FlgN -
  ACH6FI_RS08620 (ACH6FI_08615) flgK 1615422..1617248 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  ACH6FI_RS08625 (ACH6FI_08620) - 1617265..1618029 (+) 765 WP_002851318.1 TIGR02757 family protein -
  ACH6FI_RS08630 (ACH6FI_08625) - 1618033..1618803 (+) 771 WP_002873601.1 TSUP family transporter -
  ACH6FI_RS08635 (ACH6FI_08630) ctsF 1618790..1619971 (-) 1182 WP_057041182.1 type II secretion system F family protein Machinery gene
  ACH6FI_RS08640 (ACH6FI_08635) ctsE 1619968..1621527 (-) 1560 WP_032601517.1 GspE/PulE family protein Machinery gene
  ACH6FI_RS08645 (ACH6FI_08640) ctsX 1621517..1622104 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FI_RS08650 (ACH6FI_08645) ctsP 1622108..1622716 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FI_RS08655 (ACH6FI_08650) ctsD 1622709..1624121 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FI_RS08660 (ACH6FI_08655) ctsR 1624099..1624410 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45715.36 Da        Isoelectric Point: 8.8933

>NTDB_id=1066845 ACH6FI_RS08635 WP_057041182.1 1618790..1619971(-) (ctsF) [Campylobacter jejuni strain YH021]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1066845 ACH6FI_RS08635 WP_057041182.1 1618790..1619971(-) (ctsF) [Campylobacter jejuni strain YH021]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment