Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FF_RS07560 Genome accession   NZ_CP172356
Coordinates   1471054..1471371 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain YH025     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466054..1476371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FF_RS07540 (ACH6FF_07540) ctsE 1466923..1468482 (-) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  ACH6FF_RS07545 (ACH6FF_07545) ctsX 1468472..1469059 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FF_RS07550 (ACH6FF_07550) ctsP 1469063..1469671 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FF_RS07555 (ACH6FF_07555) ctsD 1469664..1471082 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FF_RS07560 (ACH6FF_07560) ctsR 1471054..1471371 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  ACH6FF_RS07565 (ACH6FF_07565) nifJ 1471395..1474955 (-) 3561 WP_020836903.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FF_RS07570 (ACH6FF_07570) - 1475048..1475689 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=1066741 ACH6FF_RS07560 WP_002851255.1 1471054..1471371(-) (ctsR) [Campylobacter jejuni strain YH025]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1066741 ACH6FF_RS07560 WP_002851255.1 1471054..1471371(-) (ctsR) [Campylobacter jejuni strain YH025]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment