Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH6FF_RS06880 Genome accession   NZ_CP172356
Coordinates   1329947..1330915 (+) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain YH025     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324947..1335915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FF_RS06855 (ACH6FF_06855) cdsA 1325859..1326584 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  ACH6FF_RS06860 (ACH6FF_06860) - 1326593..1326931 (-) 339 WP_002852397.1 hypothetical protein -
  ACH6FF_RS06865 (ACH6FF_06865) - 1326933..1328240 (-) 1308 WP_002871961.1 NFACT family protein -
  ACH6FF_RS06870 (ACH6FF_06870) mobA 1328301..1328876 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  ACH6FF_RS06875 (ACH6FF_06875) pldA 1328873..1329861 (+) 989 Protein_1334 phospholipase A -
  ACH6FF_RS06880 (ACH6FF_06880) ceuB 1329947..1330915 (+) 969 WP_002874446.1 ABC transporter permease Machinery gene
  ACH6FF_RS06885 (ACH6FF_06885) ceuC 1330908..1331846 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  ACH6FF_RS06890 (ACH6FF_06890) ceuD 1331843..1332598 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  ACH6FF_RS06895 (ACH6FF_06895) ceuB 1332611..1333603 (+) 993 WP_002852385.1 enterochelin ABC transporter substrate-binding protein CeuB -
  ACH6FF_RS06905 (ACH6FF_06905) - 1333829..1334383 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=1066733 ACH6FF_RS06880 WP_002874446.1 1329947..1330915(+) (ceuB) [Campylobacter jejuni strain YH025]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1066733 ACH6FF_RS06880 WP_002874446.1 1329947..1330915(+) (ceuB) [Campylobacter jejuni strain YH025]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTATTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment