Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | ACH6FF_RS05880 | Genome accession | NZ_CP172356 |
| Coordinates | 1129027..1129986 (+) | Length | 319 a.a. |
| NCBI ID | WP_002852903.1 | Uniprot ID | A0A5Y6P8U5 |
| Organism | Campylobacter jejuni strain YH025 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1111346..1139322 | 1129027..1129986 | within | 0 |
Gene organization within MGE regions
Location: 1111346..1139322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FF_RS05795 (ACH6FF_05795) | pglI | 1111346..1112275 (-) | 930 | WP_002852770.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| ACH6FF_RS05800 (ACH6FF_05800) | pglH | 1112268..1113347 (-) | 1080 | WP_010891911.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| ACH6FF_RS05805 (ACH6FF_05805) | pglK | 1113344..1115038 (-) | 1695 | WP_002858308.1 | ABC-type lipopolysaccharide transporter PglK | - |
| ACH6FF_RS05810 (ACH6FF_05810) | galE | 1115032..1116018 (-) | 987 | WP_002852683.1 | UDP-glucose 4-epimerase GalE | - |
| ACH6FF_RS05815 (ACH6FF_05815) | - | 1116076..1116870 (-) | 795 | WP_002852820.1 | 3'-5' exonuclease | - |
| ACH6FF_RS05820 (ACH6FF_05820) | waaC | 1116937..1117965 (+) | 1029 | WP_052796575.1 | lipopolysaccharide heptosyltransferase I | - |
| ACH6FF_RS05825 (ACH6FF_05825) | htrB | 1117955..1118842 (+) | 888 | WP_052796576.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| ACH6FF_RS05830 (ACH6FF_05830) | - | 1118839..1120384 (+) | 1546 | Protein_1128 | glycosyltransferase | - |
| ACH6FF_RS05835 (ACH6FF_05835) | - | 1120388..1121557 (+) | 1170 | WP_052796578.1 | glycosyltransferase family 2 protein | - |
| ACH6FF_RS05840 (ACH6FF_05840) | - | 1121627..1122670 (+) | 1044 | WP_002870498.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| ACH6FF_RS05845 (ACH6FF_05845) | - | 1122656..1123561 (-) | 906 | WP_002924067.1 | glycosyltransferase family 2 protein | - |
| ACH6FF_RS05850 (ACH6FF_05850) | - | 1123650..1124525 (+) | 876 | WP_002878823.1 | alpha-2,3-sialyltransferase | - |
| ACH6FF_RS05855 (ACH6FF_05855) | neuB | 1124526..1125566 (+) | 1041 | WP_002924069.1 | N-acetylneuraminate synthase | - |
| ACH6FF_RS05860 (ACH6FF_05860) | neuC | 1125563..1126681 (+) | 1119 | WP_052796579.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| ACH6FF_RS05865 (ACH6FF_05865) | - | 1126678..1127343 (+) | 666 | WP_002878820.1 | cytidylyltransferase domain-containing protein | - |
| ACH6FF_RS05870 (ACH6FF_05870) | - | 1127331..1128164 (+) | 834 | WP_002878819.1 | CatB-related O-acetyltransferase | - |
| ACH6FF_RS05875 (ACH6FF_05875) | waaV | 1128156..1128968 (-) | 813 | WP_002878817.1 | glycosyltransferase family 2 protein | - |
| ACH6FF_RS05880 (ACH6FF_05880) | waaF | 1129027..1129986 (+) | 960 | WP_002852903.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| ACH6FF_RS05885 (ACH6FF_05885) | gmhA | 1129967..1130527 (-) | 561 | WP_002852775.1 | D-sedoheptulose 7-phosphate isomerase | - |
| ACH6FF_RS05890 (ACH6FF_05890) | rfaE1 | 1130524..1131909 (-) | 1386 | WP_002852777.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| ACH6FF_RS05895 (ACH6FF_05895) | rfaD | 1131902..1132855 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| ACH6FF_RS05900 (ACH6FF_05900) | gmhB | 1132856..1133416 (-) | 561 | WP_002924071.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| ACH6FF_RS05905 (ACH6FF_05905) | - | 1133497..1133799 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| ACH6FF_RS05910 (ACH6FF_05910) | ccoS | 1133822..1134028 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| ACH6FF_RS05915 (ACH6FF_05915) | - | 1134025..1136382 (-) | 2358 | WP_010891913.1 | heavy metal translocating P-type ATPase | - |
| ACH6FF_RS05920 (ACH6FF_05920) | rho | 1136491..1137789 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| ACH6FF_RS05925 (ACH6FF_05925) | dnaX | 1137793..1139322 (+) | 1530 | WP_002875420.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36766.44 Da Isoelectric Point: 10.4054
>NTDB_id=1066728 ACH6FF_RS05880 WP_002852903.1 1129027..1129986(+) (waaF) [Campylobacter jejuni strain YH025]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1066728 ACH6FF_RS05880 WP_002852903.1 1129027..1129986(+) (waaF) [Campylobacter jejuni strain YH025]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.984 |
100 |
0.95 |