Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   ACH6FF_RS03600 Genome accession   NZ_CP172356
Coordinates   685617..686054 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain YH025     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680617..691054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FF_RS03580 (ACH6FF_03580) kdpD 681109..682929 (+) 1821 WP_240684522.1 sensor histidine kinase KdpD -
  ACH6FF_RS03585 (ACH6FF_03585) uvrB 683031..685004 (-) 1974 WP_052796467.1 excinuclease ABC subunit UvrB -
  ACH6FF_RS03590 (ACH6FF_03590) - 685158..685388 (+) 231 WP_002852327.1 hypothetical protein -
  ACH6FF_RS03595 (ACH6FF_03595) - 685378..685620 (+) 243 WP_002854947.1 hypothetical protein -
  ACH6FF_RS03600 (ACH6FF_03600) Cj0683 685617..686054 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACH6FF_RS03605 (ACH6FF_03605) priA 686036..687889 (+) 1854 WP_002924620.1 primosomal protein N' -
  ACH6FF_RS03610 (ACH6FF_03610) cipA 687899..689292 (-) 1394 Protein_700 DUF2972 domain-containing protein -
  ACH6FF_RS03615 (ACH6FF_03615) ispG 689438..690511 (+) 1074 WP_002873329.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=1066723 ACH6FF_RS03600 WP_002852324.1 685617..686054(+) (Cj0683) [Campylobacter jejuni strain YH025]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1066723 ACH6FF_RS03600 WP_002852324.1 685617..686054(+) (Cj0683) [Campylobacter jejuni strain YH025]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAATAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment