Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FN_RS07745 Genome accession   NZ_CP172354
Coordinates   1480935..1481246 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH026     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475935..1486246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FN_RS07725 (ACH6FN_07735) ctsE 1476804..1478363 (-) 1560 WP_021137528.1 GspE/PulE family protein Machinery gene
  ACH6FN_RS07730 (ACH6FN_07740) ctsX 1478353..1478940 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FN_RS07735 (ACH6FN_07745) ctsP 1478944..1479552 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FN_RS07740 (ACH6FN_07750) ctsD 1479545..1480957 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FN_RS07745 (ACH6FN_07755) ctsR 1480935..1481246 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FN_RS07750 (ACH6FN_07760) nifJ 1481270..1484830 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FN_RS07755 (ACH6FN_07765) - 1484923..1485563 (-) 641 Protein_1509 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1066713 ACH6FN_RS07745 WP_002855438.1 1480935..1481246(-) (ctsR) [Campylobacter jejuni strain YH026]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1066713 ACH6FN_RS07745 WP_002855438.1 1480935..1481246(-) (ctsR) [Campylobacter jejuni strain YH026]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment