Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | ACH6FN_RS05550 | Genome accession | NZ_CP172354 |
| Coordinates | 1048398..1048700 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain YH026 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1043398..1053700
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FN_RS05525 (ACH6FN_05535) | rpsR | 1043760..1044020 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| ACH6FN_RS05530 (ACH6FN_05540) | lon | 1044081..1046456 (-) | 2376 | WP_002858084.1 | endopeptidase La | - |
| ACH6FN_RS05535 (ACH6FN_05545) | - | 1046473..1047120 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| ACH6FN_RS05540 (ACH6FN_05550) | fliW | 1047281..1047670 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| ACH6FN_RS05545 (ACH6FN_05555) | proC | 1047670..1048401 (+) | 732 | WP_002864259.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| ACH6FN_RS05550 (ACH6FN_05560) | ctsT | 1048398..1048700 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| ACH6FN_RS05555 (ACH6FN_05565) | - | 1048697..1049359 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| ACH6FN_RS05560 (ACH6FN_05570) | - | 1049356..1049808 (+) | 453 | WP_002894305.1 | hypothetical protein | - |
| ACH6FN_RS05565 (ACH6FN_05575) | hemD | 1049805..1050434 (-) | 630 | WP_002864257.1 | uroporphyrinogen-III synthase | - |
| ACH6FN_RS05570 (ACH6FN_05580) | thiE | 1050412..1051044 (-) | 633 | WP_002864256.1 | thiamine phosphate synthase | - |
| ACH6FN_RS05575 (ACH6FN_05585) | thiD | 1051034..1051846 (-) | 813 | WP_002894307.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACH6FN_RS05580 (ACH6FN_05590) | - | 1051843..1052529 (-) | 687 | WP_002894310.1 | endonuclease III domain-containing protein | - |
| ACH6FN_RS05585 (ACH6FN_05595) | - | 1052526..1053287 (-) | 762 | WP_002894311.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=1066698 ACH6FN_RS05550 WP_002853046.1 1048398..1048700(+) (ctsT) [Campylobacter jejuni strain YH026]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=1066698 ACH6FN_RS05550 WP_002853046.1 1048398..1048700(+) (ctsT) [Campylobacter jejuni strain YH026]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |