Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FO_RS07405 Genome accession   NZ_CP172351
Coordinates   1434952..1435263 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH028     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429952..1440263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FO_RS07385 (ACH6FO_07385) ctsE 1430821..1432380 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  ACH6FO_RS07390 (ACH6FO_07390) ctsX 1432370..1432957 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  ACH6FO_RS07395 (ACH6FO_07395) ctsP 1432961..1433569 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  ACH6FO_RS07400 (ACH6FO_07400) ctsD 1433562..1434974 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FO_RS07405 (ACH6FO_07405) ctsR 1434952..1435263 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  ACH6FO_RS07410 (ACH6FO_07410) nifJ 1435287..1438847 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FO_RS07415 (ACH6FO_07415) - 1438940..1439581 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=1066661 ACH6FO_RS07405 WP_002862131.1 1434952..1435263(-) (ctsR) [Campylobacter jejuni strain YH028]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1066661 ACH6FO_RS07405 WP_002862131.1 1434952..1435263(-) (ctsR) [Campylobacter jejuni strain YH028]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment