Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   ACH6FO_RS05885 Genome accession   NZ_CP172351
Coordinates   1126898..1127848 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain YH028     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121898..1132848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FO_RS05860 (ACH6FO_05860) - 1122245..1123269 (-) 1025 Protein_1134 hypothetical protein -
  ACH6FO_RS05865 (ACH6FO_05865) - 1123340..1124113 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  ACH6FO_RS05870 (ACH6FO_05870) wlaTB 1124106..1125062 (+) 957 WP_002891855.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  ACH6FO_RS05875 (ACH6FO_05875) wlaTC 1125059..1126018 (+) 960 WP_002891853.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  ACH6FO_RS05880 (ACH6FO_05880) waaV 1126021..1126839 (-) 819 WP_002877115.1 glycosyltransferase family 2 protein -
  ACH6FO_RS05885 (ACH6FO_05885) waaF 1126898..1127848 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  ACH6FO_RS05890 (ACH6FO_05890) - 1127900..1129399 (+) 1500 WP_002877116.1 MBOAT family protein -
  ACH6FO_RS05895 (ACH6FO_05895) - 1129547..1130524 (+) 978 WP_002866168.1 hypothetical protein -
  ACH6FO_RS05900 (ACH6FO_05900) gmhA 1130528..1131088 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  ACH6FO_RS05905 (ACH6FO_05905) rfaE1 1131085..1132470 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=1066648 ACH6FO_RS05885 WP_002866164.1 1126898..1127848(+) (waaF) [Campylobacter jejuni strain YH028]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1066648 ACH6FO_RS05885 WP_002866164.1 1126898..1127848(+) (waaF) [Campylobacter jejuni strain YH028]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934

Multiple sequence alignment