Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FH_RS07320 Genome accession   NZ_CP172349
Coordinates   1441544..1441855 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH029     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1436544..1446855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FH_RS07300 (ACH6FH_07300) ctsE 1437413..1438972 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  ACH6FH_RS07305 (ACH6FH_07305) ctsX 1438962..1439549 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FH_RS07310 (ACH6FH_07310) ctsP 1439553..1440161 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FH_RS07315 (ACH6FH_07315) ctsD 1440154..1441566 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FH_RS07320 (ACH6FH_07320) ctsR 1441544..1441855 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FH_RS07325 (ACH6FH_07325) nifJ 1441879..1445439 (-) 3561 WP_002869199.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FH_RS07330 (ACH6FH_07330) - 1445532..1446173 (-) 642 WP_002869201.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1066633 ACH6FH_RS07320 WP_002855438.1 1441544..1441855(-) (ctsR) [Campylobacter jejuni strain YH029]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1066633 ACH6FH_RS07320 WP_002855438.1 1441544..1441855(-) (ctsR) [Campylobacter jejuni strain YH029]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment