Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACH6FB_RS07595 Genome accession   NZ_CP172348
Coordinates   1466667..1467851 (-) Length   394 a.a.
NCBI ID   WP_011049977.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH030     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461667..1472851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FB_RS07570 (ACH6FB_07570) fliL 1462815..1463351 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  ACH6FB_RS07575 (ACH6FB_07575) acpS 1463351..1463698 (+) 348 WP_002825806.1 holo-ACP synthase -
  ACH6FB_RS07580 (ACH6FB_07580) - 1463699..1464118 (-) 420 WP_240378256.1 hypothetical protein -
  ACH6FB_RS07585 (ACH6FB_07585) - 1464115..1465476 (-) 1362 WP_395766250.1 cytochrome P450 -
  ACH6FB_RS07590 (ACH6FB_07590) - 1465473..1466594 (-) 1122 WP_395766251.1 DUF829 domain-containing protein -
  ACH6FB_RS07595 (ACH6FB_07595) kpsS 1466667..1467851 (-) 1185 WP_011049977.1 capsule polysaccharide modification protein KpsS Regulator
  ACH6FB_RS07600 (ACH6FB_07600) kpsC 1467848..1469917 (-) 2070 WP_032597527.1 capsular polysaccharide biosynthesis protein -
  ACH6FB_RS07605 (ACH6FB_07605) - 1469933..1471816 (-) 1884 WP_002867279.1 hypothetical protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46810.54 Da        Isoelectric Point: 9.9369

>NTDB_id=1066600 ACH6FB_RS07595 WP_011049977.1 1466667..1467851(-) (kpsS) [Campylobacter jejuni strain YH030]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIDETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=1066600 ACH6FB_RS07595 WP_011049977.1 1466667..1467851(-) (kpsS) [Campylobacter jejuni strain YH030]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGACCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGATGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98

Multiple sequence alignment