Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACH2FV_RS11700 Genome accession   NZ_CP172339
Coordinates   2281969..2282739 (-) Length   256 a.a.
NCBI ID   WP_041106913.1    Uniprot ID   -
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2276969..2287739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS11680 (ACH2FV_11680) - 2277062..2277883 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  ACH2FV_RS11685 (ACH2FV_11685) - 2277909..2278547 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  ACH2FV_RS11690 (ACH2FV_11690) glyS 2278715..2280760 (-) 2046 WP_349904866.1 glycine--tRNA ligase subunit beta -
  ACH2FV_RS11695 (ACH2FV_11695) glyQ 2280753..2281640 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  ACH2FV_RS11700 (ACH2FV_11700) recO 2281969..2282739 (-) 771 WP_041106913.1 DNA repair protein RecO Machinery gene
  ACH2FV_RS11705 (ACH2FV_11705) - 2282775..2282918 (-) 144 WP_003217288.1 YqzL family protein -
  ACH2FV_RS11710 (ACH2FV_11710) era 2283066..2283971 (-) 906 WP_007501305.1 GTPase Era -
  ACH2FV_RS11715 (ACH2FV_11715) - 2283964..2284362 (-) 399 WP_008356263.1 cytidine deaminase -
  ACH2FV_RS11720 (ACH2FV_11720) - 2284476..2284862 (-) 387 WP_075623736.1 diacylglycerol kinase family protein -
  ACH2FV_RS11725 (ACH2FV_11725) ybeY 2284840..2285319 (-) 480 WP_041106915.1 rRNA maturation RNase YbeY -
  ACH2FV_RS11730 (ACH2FV_11730) - 2285320..2287431 (-) 2112 WP_369810472.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29218.90 Da        Isoelectric Point: 8.4348

>NTDB_id=1066517 ACH2FV_RS11700 WP_041106913.1 2281969..2282739(-) (recO) [Bacillus safensis subsp. safensis strain KGU003]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1066517 ACH2FV_RS11700 WP_041106913.1 2281969..2282739(-) (recO) [Bacillus safensis subsp. safensis strain KGU003]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCTATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGTACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAGCCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment