Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH2FV_RS07775 Genome accession   NZ_CP172339
Coordinates   1523004..1523906 (+) Length   300 a.a.
NCBI ID   WP_041108971.1    Uniprot ID   -
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1518004..1528906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS07755 (ACH2FV_07755) - 1518670..1520406 (+) 1737 WP_395894574.1 glycosyltransferase -
  ACH2FV_RS07760 (ACH2FV_07760) - 1520403..1520678 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  ACH2FV_RS07765 (ACH2FV_07765) sucC 1520855..1522015 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  ACH2FV_RS07770 (ACH2FV_07770) sucD 1522038..1522940 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  ACH2FV_RS07775 (ACH2FV_07775) dprA 1523004..1523906 (+) 903 WP_041108971.1 DNA-processing protein DprA Machinery gene
  ACH2FV_RS07780 (ACH2FV_07780) topA 1524099..1526174 (+) 2076 WP_041108973.1 type I DNA topoisomerase -
  ACH2FV_RS07785 (ACH2FV_07785) trmFO 1526245..1527549 (+) 1305 WP_395894576.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACH2FV_RS07790 (ACH2FV_07790) xerC 1527612..1528529 (+) 918 WP_087978882.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34071.41 Da        Isoelectric Point: 8.5961

>NTDB_id=1066506 ACH2FV_RS07775 WP_041108971.1 1523004..1523906(+) (dprA) [Bacillus safensis subsp. safensis strain KGU003]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLTQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRIPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1066506 ACH2FV_RS07775 WP_041108971.1 1523004..1523906(+) (dprA) [Bacillus safensis subsp. safensis strain KGU003]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAACTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAACGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAATTCCATCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACAATCGGCATTATAGCAGGCGGCTTTCAGCATTTATACCCAAAAGAACATGC
ACAAATGGCTCAATACATGGGCGAACATCATTTGCTTTTGTCAGAGCATCCACCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCCGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383

Multiple sequence alignment