Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACH2FV_RS06945 Genome accession   NZ_CP172339
Coordinates   1357823..1358101 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352823..1363101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS06920 (ACH2FV_06920) - 1352915..1353190 (-) 276 WP_024424743.1 hypothetical protein -
  ACH2FV_RS06925 (ACH2FV_06925) - 1353334..1354953 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACH2FV_RS06930 (ACH2FV_06930) - 1354992..1356224 (-) 1233 WP_395894533.1 aminopeptidase -
  ACH2FV_RS06935 (ACH2FV_06935) - 1356333..1356464 (-) 132 WP_003210922.1 protein YkpC -
  ACH2FV_RS06940 (ACH2FV_06940) mreBH 1356539..1357546 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  ACH2FV_RS06945 (ACH2FV_06945) abrB 1357823..1358101 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACH2FV_RS06950 (ACH2FV_06950) - 1358246..1359556 (+) 1311 WP_075622960.1 ATP-binding protein -
  ACH2FV_RS06955 (ACH2FV_06955) - 1359561..1360397 (+) 837 WP_163115187.1 gamma-glutamylcyclotransferase -
  ACH2FV_RS06960 (ACH2FV_06960) - 1360435..1361103 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  ACH2FV_RS06965 (ACH2FV_06965) ade 1361366..1363096 (+) 1731 WP_395894534.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=1066505 ACH2FV_RS06945 WP_024424746.1 1357823..1358101(+) (abrB) [Bacillus safensis subsp. safensis strain KGU003]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1066505 ACH2FV_RS06945 WP_024424746.1 1357823..1358101(+) (abrB) [Bacillus safensis subsp. safensis strain KGU003]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment