Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACH2FV_RS01990 Genome accession   NZ_CP172339
Coordinates   370778..371206 (-) Length   142 a.a.
NCBI ID   WP_041106613.1    Uniprot ID   A0A1L6ZHX2
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 365778..376206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS01960 (ACH2FV_01960) - 365940..366269 (+) 330 WP_024424311.1 YckD family protein -
  ACH2FV_RS01965 (ACH2FV_01965) - 366313..367077 (-) 765 WP_395894294.1 MBL fold metallo-hydrolase -
  ACH2FV_RS01970 (ACH2FV_01970) - 367193..367609 (+) 417 WP_041106693.1 Lrp/AsnC family transcriptional regulator -
  ACH2FV_RS01975 (ACH2FV_01975) - 367638..368444 (+) 807 WP_041106620.1 aminoglycoside N(3)-acetyltransferase -
  ACH2FV_RS01980 (ACH2FV_01980) - 368446..368832 (-) 387 WP_041106618.1 competence protein ComJ -
  ACH2FV_RS01985 (ACH2FV_01985) - 368952..370649 (-) 1698 WP_041106616.1 methyl-accepting chemotaxis protein -
  ACH2FV_RS01990 (ACH2FV_01990) nucA/comI 370778..371206 (-) 429 WP_041106613.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACH2FV_RS01995 (ACH2FV_01995) - 371574..373643 (+) 2070 WP_395894295.1 hydantoinase/oxoprolinase family protein -
  ACH2FV_RS02000 (ACH2FV_02000) - 373633..375621 (+) 1989 WP_395894296.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15957.94 Da        Isoelectric Point: 6.2208

>NTDB_id=1066485 ACH2FV_RS01990 WP_041106613.1 370778..371206(-) (nucA/comI) [Bacillus safensis subsp. safensis strain KGU003]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDDQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1066485 ACH2FV_RS01990 WP_041106613.1 370778..371206(-) (nucA/comI) [Bacillus safensis subsp. safensis strain KGU003]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCATCCATTTGTACAATTGACCGTAAACATAGTGATGATCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCAATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZHX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.789

80.282

0.528

Multiple sequence alignment