Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACH2FV_RS00015 Genome accession   NZ_CP172339
Coordinates   1552..2664 (+) Length   370 a.a.
NCBI ID   WP_041105878.1    Uniprot ID   A0AAP7UIW5
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..7664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS00005 (ACH2FV_00005) dnaN 33..1169 (+) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  ACH2FV_RS00010 (ACH2FV_00010) yaaA 1320..1535 (+) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  ACH2FV_RS00015 (ACH2FV_00015) recF 1552..2664 (+) 1113 WP_041105878.1 DNA replication/repair protein RecF Machinery gene
  ACH2FV_RS00020 (ACH2FV_00020) remB 2682..2927 (+) 246 WP_056766786.1 extracellular matrix regulator RemB -
  ACH2FV_RS00025 (ACH2FV_00025) gyrB 2985..4901 (+) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACH2FV_RS00030 (ACH2FV_00030) gyrA 5134..7638 (+) 2505 WP_087976616.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42559.64 Da        Isoelectric Point: 7.3663

>NTDB_id=1066480 ACH2FV_RS00015 WP_041105878.1 1552..2664(+) (recF) [Bacillus safensis subsp. safensis strain KGU003]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1066480 ACH2FV_RS00015 WP_041105878.1 1552..2664(+) (recF) [Bacillus safensis subsp. safensis strain KGU003]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCATTAAATACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATTGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGGCGAGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment