Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACH6KY_RS15040 Genome accession   NZ_CP172331
Coordinates   3035303..3035932 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain APEC-O117H42     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030303..3040932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6KY_RS15025 (ACH6KY_15015) helD 3030545..3032599 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACH6KY_RS15030 (ACH6KY_15020) yccF 3032722..3033168 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACH6KY_RS15035 (ACH6KY_15025) yccS 3033178..3035340 (+) 2163 WP_122991440.1 YccS family putative transporter -
  ACH6KY_RS15040 (ACH6KY_15030) sxy/tfoX 3035303..3035932 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACH6KY_RS15045 (ACH6KY_15035) sulA 3036151..3036660 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACH6KY_RS15050 (ACH6KY_15040) ompA 3037017..3038057 (+) 1041 WP_000750416.1 porin OmpA -
  ACH6KY_RS15055 (ACH6KY_15045) matP 3038133..3038585 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACH6KY_RS15060 (ACH6KY_15050) ycbZ 3038771..3040531 (+) 1761 WP_112934306.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1066450 ACH6KY_RS15040 WP_000839153.1 3035303..3035932(-) (sxy/tfoX) [Escherichia coli strain APEC-O117H42]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1066450 ACH6KY_RS15040 WP_000839153.1 3035303..3035932(-) (sxy/tfoX) [Escherichia coli strain APEC-O117H42]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment