Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AABJ45_RS09465 Genome accession   NZ_AP028611
Coordinates   1867837..1868547 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain Sep6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862837..1873547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ45_RS09450 (TKY121527_18890) - 1863378..1863626 (-) 249 WP_000364990.1 YneF family protein -
  AABJ45_RS09455 (TKY121527_18900) treC 1863882..1865507 (-) 1626 WP_000171210.1 alpha,alpha-phosphotrehalase -
  AABJ45_RS09460 (TKY121527_18910) treP 1865685..1867652 (-) 1968 WP_000514323.1 PTS system trehalose-specific EIIBC component -
  AABJ45_RS09465 (TKY121527_18920) treR 1867837..1868547 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AABJ45_RS09470 - 1868702..1870028 (+) 1327 Protein_1876 ISL3 family transposase -
  AABJ45_RS09475 (TKY121527_18950) amiF 1870103..1871029 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  AABJ45_RS09480 (TKY121527_18960) amiE 1871040..1872107 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  AABJ45_RS09485 (TKY121527_18970) amiD 1872116..1873042 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=106599 AABJ45_RS09465 WP_000760673.1 1867837..1868547(+) (treR) [Streptococcus pneumoniae strain Sep6]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=106599 AABJ45_RS09465 WP_000760673.1 1867837..1868547(+) (treR) [Streptococcus pneumoniae strain Sep6]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment