Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACEWPC_RS17355 Genome accession   NZ_CP172247
Coordinates   3437993..3438589 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain H20-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3432993..3443589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWPC_RS17340 (ACEWPC_17340) helD 3433204..3435258 (-) 2055 WP_065802235.1 DNA helicase IV -
  ACEWPC_RS17345 (ACEWPC_17345) - 3435383..3435829 (+) 447 WP_004201437.1 YccF domain-containing protein -
  ACEWPC_RS17350 (ACEWPC_17350) yccS 3435847..3437982 (+) 2136 WP_004201435.1 YccS family putative transporter -
  ACEWPC_RS17355 (ACEWPC_17355) sxy/tfoX 3437993..3438589 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  ACEWPC_RS17360 (ACEWPC_17360) - 3438607..3438912 (-) 306 WP_158238036.1 hypothetical protein -
  ACEWPC_RS17365 (ACEWPC_17365) sulA 3438938..3439447 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  ACEWPC_RS17370 (ACEWPC_17370) ompA 3439800..3440870 (+) 1071 WP_002898408.1 porin OmpA -
  ACEWPC_RS17375 (ACEWPC_17375) matP 3441052..3441504 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACEWPC_RS17380 (ACEWPC_17380) - 3441690..3443447 (+) 1758 WP_017899459.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=1065941 ACEWPC_RS17355 WP_004201433.1 3437993..3438589(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain H20-2]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1065941 ACEWPC_RS17355 WP_004201433.1 3437993..3438589(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain H20-2]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCATTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCCGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAATAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCACGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment