Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACHZK0_RS21425 Genome accession   NZ_CP172246
Coordinates   4171855..4174194 (-) Length   779 a.a.
NCBI ID   WP_242253434.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4166855..4179194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS21405 (ACHZK0_21405) - 4168053..4168229 (-) 177 WP_001242605.1 hypothetical protein -
  ACHZK0_RS21410 (ACHZK0_21410) - 4168443..4168883 (-) 441 WP_001266958.1 D-tyrosyl-tRNA(Tyr) deacylase -
  ACHZK0_RS21415 (ACHZK0_21415) relA 4168901..4171084 (-) 2184 WP_242253422.1 GTP diphosphokinase -
  ACHZK0_RS21420 (ACHZK0_21420) - 4171295..4171807 (-) 513 WP_000346221.1 adenine phosphoribosyltransferase -
  ACHZK0_RS21425 (ACHZK0_21425) recJ 4171855..4174194 (-) 2340 WP_242253434.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACHZK0_RS21430 (ACHZK0_21430) - 4174296..4175189 (-) 894 WP_242253437.1 cation diffusion facilitator family transporter -
  ACHZK0_RS21435 (ACHZK0_21435) secDF 4175495..4177759 (-) 2265 WP_061677198.1 protein translocase subunit SecDF -
  ACHZK0_RS21440 (ACHZK0_21440) - 4178030..4178314 (-) 285 WP_242253439.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88002.53 Da        Isoelectric Point: 4.9580

>NTDB_id=1065913 ACHZK0_RS21425 WP_242253434.1 4171855..4174194(-) (recJ) [Bacillus sp. 3G2]
MLQPKTRWKEKEYNNERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAVQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GVDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVAELRRRLNEQAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDADLESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPKEKITMVYFSEEVLNKFSLEDYKEHMMHASEVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=1065913 ACHZK0_RS21425 WP_242253434.1 4171855..4174194(-) (recJ) [Bacillus sp. 3G2]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATAATGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGGTTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGGGCGGACGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGGTATGGACCAAACGAAGAAGCGTTTCGTTGGGCAC
ATAGCGCAGGGTTCTCGCTAATTATTACTGTTGATACTGGTATCGCAGCAGTGCATGAAGCGAAGGTAGCGAAGGAGCTT
GGAGTAGATCTGATTATTACAGATCACCATGAGCCACCACCGGAATTGCCAGAAGCACTTGCGATTATTCATCCGAAATT
AGATGGCGGTGTGTATCCGTTCCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCGCATGCACTATTAGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTGATTGGTACAGTAGCCGATTTAGTATCACTTCATGGTGAGAATAGATTGTTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACAAAAAATATCGGACTAAAGGCGCTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGCATTGGCTTCTCGATTGCACCGCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACAC
CGGCTGTACATCTTTTATTATCAGATGACCCAGAAGAAGCAAAAGAGCTAGCTGAAGAAATTGATGAGTTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAAATAATTTTCCGCCAGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CGACGATTGTATTAAGTATTGATCCTGTAAAAGAAACAGCAAAAGGTTCAGCACGTAGTATTGCAGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCAATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGCTGAATTGCGCCGCCGCTTAAATGAACAAGCAGAAGTAATTTTAACGGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTCTTTTGTAAAGTGGAGGATGTAACACTTGCAGCAATTGAAGATATGCAAAAGTTAGCACCATTTGGTGTT
GGAAATCCAAAACCACGTATTGCAGTGAAGGATGCAGATCTAGAAAGTATTCGTGCAATCGGATCAGACGGTTCACATTT
GAAAATGGCTCTTCGTGATGGACAAGCGACGCTGGATACAATTGGATTTGGTTTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCCGTAATAGGAGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAGGCGTGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAGGCGAATGTAGCAGAACTTCCAAA
AGAAAAAATAACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACTCATTTAGACGATCAATACATCGTGTTACTTGATTTACCAAAAGGAACAGATGAATTACGAGAT
TTATTTAAAGTGGGGTTCCCGTCACGAATTTATACGCTATTTTATCAAGAGAATAATCATTTATTTAGCACTGTTCCAAC
GAGAGAACACTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATACGGAGCACAACTCT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.713

99.358

0.524

Multiple sequence alignment