Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACHZK0_RS20885 Genome accession   NZ_CP172246
Coordinates   4070430..4071176 (-) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4065430..4076176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS20870 (ACHZK0_20870) dnaG 4066199..4067995 (-) 1797 WP_073516535.1 DNA primase -
  ACHZK0_RS20875 (ACHZK0_20875) - 4068848..4069660 (-) 813 WP_000368939.1 pyruvate, water dikinase regulatory protein -
  ACHZK0_RS20880 (ACHZK0_20880) - 4069690..4070322 (-) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  ACHZK0_RS20885 (ACHZK0_20885) recO 4070430..4071176 (-) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  ACHZK0_RS20890 (ACHZK0_20890) - 4071210..4071353 (-) 144 WP_000883924.1 YqzL family protein -
  ACHZK0_RS20895 (ACHZK0_20895) era 4071530..4072435 (-) 906 WP_001080235.1 GTPase Era -
  ACHZK0_RS20900 (ACHZK0_20900) - 4072428..4072826 (-) 399 WP_063260793.1 cytidine deaminase -
  ACHZK0_RS20905 (ACHZK0_20905) - 4072926..4073279 (-) 354 WP_000715483.1 diacylglycerol kinase family protein -
  ACHZK0_RS20910 (ACHZK0_20910) ybeY 4073276..4073746 (-) 471 WP_000054689.1 rRNA maturation RNase YbeY -
  ACHZK0_RS20915 (ACHZK0_20915) - 4073743..4075887 (-) 2145 WP_262740297.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=1065910 ACHZK0_RS20885 WP_000487012.1 4070430..4071176(-) (recO) [Bacillus sp. 3G2]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1065910 ACHZK0_RS20885 WP_000487012.1 4070430..4071176(-) (recO) [Bacillus sp. 3G2]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTAATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTACAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCACTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTATTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGAGAAGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGGAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment