Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACHZK0_RS07925 Genome accession   NZ_CP172246
Coordinates   1540736..1541338 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus sp. 3G2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1535736..1546338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS07905 (ACHZK0_07905) dnaD 1536075..1536782 (+) 708 WP_071721963.1 DNA replication protein DnaD -
  ACHZK0_RS07910 (ACHZK0_07910) nth 1536798..1537445 (+) 648 WP_097817821.1 endonuclease III -
  ACHZK0_RS07915 (ACHZK0_07915) - 1537449..1537967 (+) 519 WP_395761396.1 YpoC family protein -
  ACHZK0_RS07920 (ACHZK0_07920) - 1537991..1540669 (-) 2679 WP_395761397.1 PBP1A family penicillin-binding protein -
  ACHZK0_RS07925 (ACHZK0_07925) recU 1540736..1541338 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  ACHZK0_RS07930 (ACHZK0_07930) - 1541442..1542467 (+) 1026 WP_395761398.1 DUF2515 domain-containing protein -
  ACHZK0_RS07935 (ACHZK0_07935) - 1542625..1542801 (-) 177 WP_097817817.1 phage portal protein -
  ACHZK0_RS07940 (ACHZK0_07940) - 1542887..1543129 (+) 243 WP_001252039.1 hypothetical protein -
  ACHZK0_RS07945 (ACHZK0_07945) - 1543145..1543489 (+) 345 WP_395761399.1 YppE family protein -
  ACHZK0_RS07950 (ACHZK0_07950) - 1543515..1543706 (-) 192 WP_000242661.1 YppF family protein -
  ACHZK0_RS07955 (ACHZK0_07955) - 1543884..1544387 (+) 504 WP_097864598.1 YppG family protein -
  ACHZK0_RS07960 (ACHZK0_07960) - 1544543..1544986 (+) 444 WP_262740693.1 spore coat protein -
  ACHZK0_RS07965 (ACHZK0_07965) - 1545043..1545597 (+) 555 WP_097817814.1 DUF1273 domain-containing protein -
  ACHZK0_RS07970 (ACHZK0_07970) gpsB 1545695..1546033 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=1065897 ACHZK0_RS07925 WP_000155592.1 1540736..1541338(-) (recU) [Bacillus sp. 3G2]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1065897 ACHZK0_RS07925 WP_000155592.1 1540736..1541338(-) (recU) [Bacillus sp. 3G2]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTAAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGGATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment