Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACHZK0_RS06550 Genome accession   NZ_CP172246
Coordinates   1288984..1289307 (-) Length   107 a.a.
NCBI ID   WP_071722219.1    Uniprot ID   A0A1Y6A3H3
Organism   Bacillus sp. 3G2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283984..1294307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS06525 (ACHZK0_06525) - 1284079..1285365 (+) 1287 WP_262740966.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ACHZK0_RS06530 (ACHZK0_06530) sipW 1285557..1286126 (+) 570 WP_071722212.1 signal peptidase I SipW -
  ACHZK0_RS06535 (ACHZK0_06535) - 1286189..1286779 (+) 591 WP_270342412.1 TasA family protein -
  ACHZK0_RS06540 (ACHZK0_06540) - 1286936..1287748 (+) 813 WP_270342406.1 DUF4047 domain-containing protein -
  ACHZK0_RS06545 (ACHZK0_06545) calY 1288321..1288914 (+) 594 WP_076536050.1 biofilm matrix protein CalY -
  ACHZK0_RS06550 (ACHZK0_06550) sinR 1288984..1289307 (-) 324 WP_071722219.1 helix-turn-helix domain-containing protein Regulator
  ACHZK0_RS06555 (ACHZK0_06555) - 1289387..1289521 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  ACHZK0_RS06560 (ACHZK0_06560) inhA1 1289864..1292251 (+) 2388 WP_262740970.1 M6 family metalloprotease immune inhibitor InhA1 -
  ACHZK0_RS06565 (ACHZK0_06565) - 1292424..1293791 (+) 1368 WP_270606050.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12354.17 Da        Isoelectric Point: 8.5805

>NTDB_id=1065895 ACHZK0_RS06550 WP_071722219.1 1288984..1289307(-) (sinR) [Bacillus sp. 3G2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1065895 ACHZK0_RS06550 WP_071722219.1 1288984..1289307(-) (sinR) [Bacillus sp. 3G2]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGACACTCTACTTCATGATGAAACAACAAAGGAAAATCATTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCACGATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6A3H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment