Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACHZK0_RS00220 Genome accession   NZ_CP172246
Coordinates   40452..40736 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. 3G2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35452..45736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS00185 (ACHZK0_00185) tmk 35603..36229 (+) 627 WP_097819353.1 dTMP kinase -
  ACHZK0_RS00190 (ACHZK0_00190) holB 36265..37248 (+) 984 WP_262742145.1 DNA polymerase III subunit delta' -
  ACHZK0_RS00195 (ACHZK0_00195) - 37254..38081 (+) 828 WP_000272429.1 PSP1 domain-containing protein -
  ACHZK0_RS00200 (ACHZK0_00200) yabA 38096..38449 (+) 354 WP_262742144.1 DNA replication initiation control protein YabA -
  ACHZK0_RS00205 (ACHZK0_00205) - 38570..39310 (+) 741 WP_262742143.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACHZK0_RS00210 (ACHZK0_00210) - 39297..39587 (+) 291 WP_000414343.1 GIY-YIG nuclease family protein -
  ACHZK0_RS00215 (ACHZK0_00215) rsmI 39556..40431 (+) 876 WP_262742142.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACHZK0_RS00220 (ACHZK0_00220) abrB 40452..40736 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACHZK0_RS00225 (ACHZK0_00225) metG 41255..43237 (+) 1983 WP_000134145.1 methionine--tRNA ligase -
  ACHZK0_RS00230 (ACHZK0_00230) - 43404..44171 (+) 768 WP_262742148.1 TatD family hydrolase -
  ACHZK0_RS00235 (ACHZK0_00235) rnmV 44367..44924 (+) 558 WP_048562636.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=1065880 ACHZK0_RS00220 WP_000843036.1 40452..40736(-) (abrB) [Bacillus sp. 3G2]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1065880 ACHZK0_RS00220 WP_000843036.1 40452..40736(-) (abrB) [Bacillus sp. 3G2]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGCGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment