Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACHZK0_RS00020 Genome accession   NZ_CP172246
Coordinates   3069..4196 (+) Length   375 a.a.
NCBI ID   WP_000470743.1    Uniprot ID   A0A164MC53
Organism   Bacillus sp. 3G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS00005 (ACHZK0_00005) dnaA 58..1398 (+) 1341 WP_262742580.1 chromosomal replication initiator protein DnaA -
  ACHZK0_RS00010 (ACHZK0_00010) dnaN 1577..2716 (+) 1140 WP_001212888.1 DNA polymerase III subunit beta -
  ACHZK0_RS00015 (ACHZK0_00015) yaaA 2844..3056 (+) 213 WP_000821366.1 S4 domain-containing protein YaaA -
  ACHZK0_RS00020 (ACHZK0_00020) recF 3069..4196 (+) 1128 WP_000470743.1 DNA replication/repair protein RecF Machinery gene
  ACHZK0_RS00025 (ACHZK0_00025) gyrB 4235..6157 (+) 1923 WP_061679590.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACHZK0_RS00030 (ACHZK0_00030) gyrA 6246..8717 (+) 2472 WP_001282859.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43363.72 Da        Isoelectric Point: 6.7809

>NTDB_id=1065878 ACHZK0_RS00020 WP_000470743.1 3069..4196(+) (recF) [Bacillus sp. 3G2]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=1065878 ACHZK0_RS00020 WP_000470743.1 3069..4196(+) (recF) [Bacillus sp. 3G2]
TTGTTTATTTCAGAAATACAGTTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
GATTATCGGTGAAAACGCGCAAGGGAAAACAAATTTGATGGAAGCGATTTACGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCGCCAGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGCTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAGCTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164MC53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment