Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHP5I_RS18275 Genome accession   NZ_CP172185
Coordinates   3629379..3630008 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GF60     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624379..3635008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5I_RS18260 (ACHP5I_18260) helD 3624621..3626675 (-) 2055 WP_096990683.1 DNA helicase IV -
  ACHP5I_RS18265 (ACHP5I_18265) yccF 3626798..3627244 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHP5I_RS18270 (ACHP5I_18270) yccS 3627254..3629416 (+) 2163 WP_122999582.1 YccS family putative transporter -
  ACHP5I_RS18275 (ACHP5I_18275) sxy/tfoX 3629379..3630008 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHP5I_RS18280 (ACHP5I_18280) sulA 3630227..3630736 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHP5I_RS18285 (ACHP5I_18285) ompA 3631093..3632145 (+) 1053 WP_000750418.1 porin OmpA -
  ACHP5I_RS18290 (ACHP5I_18290) tnpA 3632332..3632790 (+) 459 WP_000526113.1 IS200/IS605-like element IS200C family transposase -
  ACHP5I_RS18295 (ACHP5I_18295) matP 3632932..3633384 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1065638 ACHP5I_RS18275 WP_000839153.1 3629379..3630008(-) (sxy/tfoX) [Escherichia coli strain GF60]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1065638 ACHP5I_RS18275 WP_000839153.1 3629379..3630008(-) (sxy/tfoX) [Escherichia coli strain GF60]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment