Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHP5O_RS14520 Genome accession   NZ_CP172152
Coordinates   2938830..2939459 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GF31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2933830..2944459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5O_RS14505 (ACHP5O_14505) helD 2934072..2936126 (-) 2055 WP_000420536.1 DNA helicase IV -
  ACHP5O_RS14510 (ACHP5O_14510) yccF 2936249..2936695 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHP5O_RS14515 (ACHP5O_14515) yccS 2936705..2938867 (+) 2163 WP_252710277.1 YccS family putative transporter -
  ACHP5O_RS14520 (ACHP5O_14520) sxy/tfoX 2938830..2939459 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHP5O_RS14525 (ACHP5O_14525) sulA 2939678..2940187 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHP5O_RS14530 (ACHP5O_14530) ompA 2940544..2941584 (+) 1041 WP_000750416.1 porin OmpA -
  ACHP5O_RS14535 (ACHP5O_14535) matP 2941660..2942112 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHP5O_RS14540 (ACHP5O_14540) ycbZ 2942298..2944058 (+) 1761 WP_000156514.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1065506 ACHP5O_RS14520 WP_000839153.1 2938830..2939459(-) (sxy/tfoX) [Escherichia coli strain GF31]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1065506 ACHP5O_RS14520 WP_000839153.1 2938830..2939459(-) (sxy/tfoX) [Escherichia coli strain GF31]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment