Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACHP5R_RS14245 Genome accession   NZ_CP172134
Coordinates   2880557..2881186 (-) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain GF131     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 2875557..2886186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5R_RS14230 (ACHP5R_14230) helD 2875799..2877853 (-) 2055 WP_001361412.1 DNA helicase IV -
  ACHP5R_RS14235 (ACHP5R_14235) yccF 2877976..2878422 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHP5R_RS14240 (ACHP5R_14240) yccS 2878432..2880594 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ACHP5R_RS14245 (ACHP5R_14245) sxy/tfoX 2880557..2881186 (-) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHP5R_RS14250 (ACHP5R_14250) sulA 2881404..2881913 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  ACHP5R_RS14255 (ACHP5R_14255) ompA 2882270..2883322 (+) 1053 WP_001346420.1 porin OmpA -
  ACHP5R_RS14260 (ACHP5R_14260) matP 2883399..2883851 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHP5R_RS14265 (ACHP5R_14265) ycbZ 2884037..2885797 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence


Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=1065432 ACHP5R_RS14245 WP_000839133.1 2880557..2881186(-) (sxy/tfoX) [Escherichia coli strain GF131]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1065432 ACHP5R_RS14245 WP_000839133.1 2880557..2881186(-) (sxy/tfoX) [Escherichia coli strain GF131]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995


Multiple sequence alignment