Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHP5S_RS06215 Genome accession   NZ_CP172127
Coordinates   1233969..1234598 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GF43     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1228969..1239598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5S_RS06200 (ACHP5S_06200) helD 1229211..1231265 (-) 2055 WP_096983943.1 DNA helicase IV -
  ACHP5S_RS06205 (ACHP5S_06205) yccF 1231388..1231834 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHP5S_RS06210 (ACHP5S_06210) yccS 1231844..1234006 (+) 2163 WP_123000642.1 YccS family putative transporter -
  ACHP5S_RS06215 (ACHP5S_06215) sxy/tfoX 1233969..1234598 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHP5S_RS06220 (ACHP5S_06220) sulA 1234817..1235326 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHP5S_RS06225 (ACHP5S_06225) ompA 1235682..1236722 (+) 1041 WP_001309394.1 porin OmpA -
  ACHP5S_RS06230 (ACHP5S_06230) matP 1236798..1237250 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -
  ACHP5S_RS06235 (ACHP5S_06235) ycbZ 1237436..1239196 (+) 1761 WP_096983942.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1065404 ACHP5S_RS06215 WP_000839153.1 1233969..1234598(-) (sxy/tfoX) [Escherichia coli strain GF43]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1065404 ACHP5S_RS06215 WP_000839153.1 1233969..1234598(-) (sxy/tfoX) [Escherichia coli strain GF43]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment