Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | EG64_RS08180 | Genome accession | NZ_CP007606 |
| Coordinates | 389004..390014 (-) | Length | 336 a.a. |
| NCBI ID | WP_038417374.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM013B | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 384004..395014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG64_RS01900 (EG64_01960) | - | 384109..384483 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| EG64_RS01905 (EG64_01965) | - | 384773..385375 (+) | 603 | WP_000291620.1 | outer membrane protein | - |
| EG64_RS01915 (EG64_01975) | - | 385507..385914 (-) | 408 | WP_038417368.1 | hypothetical protein | - |
| EG64_RS01920 (EG64_01980) | - | 385917..386147 (-) | 231 | WP_000944425.1 | PP0621 family protein | - |
| EG64_RS01925 (EG64_01985) | rsmG | 386141..386677 (-) | 537 | WP_038417369.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| EG64_RS01930 (EG64_01990) | queA | 386674..387711 (-) | 1038 | WP_038417371.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| EG64_RS01935 (EG64_01995) | tatC | 387712..388461 (-) | 750 | WP_038417372.1 | twin-arginine translocase subunit TatC | - |
| EG64_RS01940 (EG64_02000) | tatB | 388454..388936 (-) | 483 | WP_038417373.1 | Sec-independent protein translocase protein TatB | - |
| EG64_RS08180 (EG64_02005) | ruvB | 389004..390014 (-) | 1011 | WP_038417374.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| EG64_RS08185 (EG64_02010) | panB | 390015..390827 (-) | 813 | WP_038417375.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| EG64_RS01955 (EG64_02015) | - | 390976..391698 (+) | 723 | WP_038417376.1 | hypothetical protein | - |
| EG64_RS01960 (EG64_02020) | - | 391688..392530 (+) | 843 | WP_038417377.1 | outer membrane beta-barrel protein | - |
| EG64_RS01965 (EG64_02025) | - | 392539..393483 (+) | 945 | WP_038417378.1 | outer membrane beta-barrel protein | - |
| EG64_RS01970 (EG64_02030) | - | 393493..394815 (+) | 1323 | WP_038417379.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37318.34 Da Isoelectric Point: 6.3674
>NTDB_id=106533 EG64_RS08180 WP_038417374.1 389004..390014(-) (ruvB) [Helicobacter pylori strain BM013B]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQNIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAVKLNQNIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=106533 EG64_RS08180 WP_038417374.1 389004..390014(-) (ruvB) [Helicobacter pylori strain BM013B]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATCAGTCATATTATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTTTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCCGTTAAACTCAACCAAAACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATCAGTCATATTATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCGATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCGGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTTTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTCATCATCAAAAAAGCCGCCGTTAAACTCAACCAAAACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTCGTTAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTGGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCACTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.917 |
100 |
0.979 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |