Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   AABA16_RS09135 Genome accession   NZ_AP028610
Coordinates   1777151..1778188 (-) Length   345 a.a.
NCBI ID   WP_000727268.1    Uniprot ID   A0A0U0L8C3
Organism   Streptococcus pneumoniae strain Sep5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1772151..1783188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA16_RS09110 (TKY124516_17840) - 1772890..1774221 (-) 1332 WP_000390042.1 hemolysin family protein -
  AABA16_RS09115 (TKY124516_17850) endA 1774512..1775336 (-) 825 WP_001036786.1 DNA-entry nuclease EndA Machinery gene
  AABA16_RS09120 (TKY124516_17860) - 1775375..1775563 (-) 189 WP_001813390.1 DNA-directed RNA polymerase subunit beta -
  AABA16_RS09125 (TKY124516_17870) murA 1775556..1776839 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AABA16_RS09130 (TKY124516_17880) - 1776863..1777093 (-) 231 WP_000250393.1 DUF1146 family protein -
  AABA16_RS09135 (TKY124516_17890) sepM 1777151..1778188 (-) 1038 WP_000727268.1 SepM family pheromone-processing serine protease Regulator
  AABA16_RS09140 (TKY124516_17900) coaD 1778172..1778660 (-) 489 WP_001280727.1 pantetheine-phosphate adenylyltransferase -
  AABA16_RS09145 (TKY124516_17910) rsmD 1778650..1779189 (-) 540 WP_000706957.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AABA16_RS09150 (TKY124516_17920) asnA 1779254..1780246 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  AABA16_RS09155 (TKY124516_17930) - 1780357..1781040 (-) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  AABA16_RS09160 (TKY124516_17940) - 1781096..1781836 (-) 741 WP_000152704.1 TrmH family RNA methyltransferase -
  AABA16_RS09165 (TKY124516_17950) - 1781870..1782148 (+) 279 WP_001174613.1 acylphosphatase -
  AABA16_RS09170 (TKY124516_17960) yidC 1782226..1783152 (+) 927 WP_000835941.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37551.60 Da        Isoelectric Point: 5.0724

>NTDB_id=106534 AABA16_RS09135 WP_000727268.1 1777151..1778188(-) (sepM) [Streptococcus pneumoniae strain Sep5]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKINDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=106534 AABA16_RS09135 WP_000727268.1 1777151..1778188(-) (sepM) [Streptococcus pneumoniae strain Sep5]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAATAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0U0L8C3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.357

99.13

0.588


Multiple sequence alignment