Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHL9R_RS14675 Genome accession   NZ_CP172111
Coordinates   2974933..2975562 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MJ-T     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969933..2980562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHL9R_RS14660 helD 2970175..2972229 (-) 2055 WP_000420533.1 DNA helicase IV -
  ACHL9R_RS14665 yccF 2972352..2972798 (+) 447 WP_001261231.1 YccF domain-containing protein -
  ACHL9R_RS14670 yccS 2972808..2974970 (+) 2163 WP_000875020.1 YccS family putative transporter -
  ACHL9R_RS14675 sxy/tfoX 2974933..2975562 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHL9R_RS14680 sulA 2975781..2976290 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHL9R_RS14685 ompA 2976647..2977687 (+) 1041 WP_000750416.1 porin OmpA -
  ACHL9R_RS14690 matP 2977763..2978215 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHL9R_RS14695 ycbZ 2978401..2980161 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1065284 ACHL9R_RS14675 WP_000839153.1 2974933..2975562(-) (sxy/tfoX) [Escherichia coli strain MJ-T]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1065284 ACHL9R_RS14675 WP_000839153.1 2974933..2975562(-) (sxy/tfoX) [Escherichia coli strain MJ-T]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment