Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | ACHOXR_RS14380 | Genome accession | NZ_CP172108 |
| Coordinates | 2911234..2911863 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain QL57EC | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2902062..2939191 | 2911234..2911863 | within | 0 |
Gene organization within MGE regions
Location: 2902062..2939191
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHOXR_RS14330 (ACHOXR_14330) | tusE | 2902333..2902662 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| ACHOXR_RS14335 (ACHOXR_14335) | yccX | 2902659..2902937 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| ACHOXR_RS14340 (ACHOXR_14340) | rlmI | 2903032..2904222 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| ACHOXR_RS14345 (ACHOXR_14345) | hspQ | 2904280..2904597 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| ACHOXR_RS14350 (ACHOXR_14350) | yccU | 2904642..2905055 (-) | 414 | WP_001301418.1 | CoA-binding protein | - |
| ACHOXR_RS14355 (ACHOXR_14355) | csgI | 2905228..2905890 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| ACHOXR_RS14360 (ACHOXR_14360) | mgsA | 2905986..2906444 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| ACHOXR_RS14365 (ACHOXR_14365) | helD | 2906476..2908530 (-) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| ACHOXR_RS14370 (ACHOXR_14370) | yccF | 2908653..2909099 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| ACHOXR_RS14375 (ACHOXR_14375) | yccS | 2909109..2911271 (+) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| ACHOXR_RS14380 (ACHOXR_14380) | sxy/tfoX | 2911234..2911863 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| ACHOXR_RS14385 (ACHOXR_14385) | sulA | 2912082..2912591 (+) | 510 | WP_001554869.1 | SOS-induced cell division inhibitor SulA | - |
| ACHOXR_RS14390 (ACHOXR_14390) | ompA | 2912948..2913988 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| ACHOXR_RS14395 (ACHOXR_14395) | matP | 2914064..2914516 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| ACHOXR_RS14400 (ACHOXR_14400) | ycbZ | 2914702..2916462 (+) | 1761 | WP_000156518.1 | Lon protease family protein | - |
| ACHOXR_RS14405 (ACHOXR_14405) | fabA | 2916531..2917049 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| ACHOXR_RS14410 (ACHOXR_14410) | rmf | 2917119..2917286 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| ACHOXR_RS14415 (ACHOXR_14415) | pqiC | 2917542..2918105 (-) | 564 | WP_000759118.1 | membrane integrity-associated transporter subunit PqiC | - |
| ACHOXR_RS14420 (ACHOXR_14420) | pqiB | 2918102..2919742 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| ACHOXR_RS14425 (ACHOXR_14425) | pqiA | 2919747..2921000 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| ACHOXR_RS14430 (ACHOXR_14430) | uup | 2921130..2923037 (-) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| ACHOXR_RS14435 (ACHOXR_14435) | rlmKL | 2923049..2925157 (-) | 2109 | WP_001086539.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| ACHOXR_RS14440 (ACHOXR_14440) | ycbX | 2925401..2926510 (+) | 1110 | WP_000212426.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| ACHOXR_RS14445 (ACHOXR_14445) | zapC | 2926507..2927049 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| ACHOXR_RS14450 (ACHOXR_14450) | pyrD | 2927223..2928233 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| ACHOXR_RS14455 (ACHOXR_14455) | ycbF | 2928344..2929081 (-) | 738 | WP_001111465.1 | fimbrial chaperone | - |
| ACHOXR_RS14460 (ACHOXR_14460) | ycbV | 2929047..2929562 (-) | 516 | WP_000919497.1 | fimbrial protein | - |
| ACHOXR_RS14465 (ACHOXR_14465) | ycbU | 2929570..2930112 (-) | 543 | WP_371179969.1 | fimbrial protein | - |
| ACHOXR_RS14470 (ACHOXR_14470) | - | 2930124..2930948 (-) | 825 | Protein_2835 | fimbrial protein | - |
| ACHOXR_RS14475 (ACHOXR_14475) | - | 2931013..2931717 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| ACHOXR_RS24555 | - | 2931771..2932022 (-) | 252 | Protein_2837 | fimbrial protein | - |
| ACHOXR_RS14480 (ACHOXR_14480) | elfC | 2932013..2934613 (-) | 2601 | WP_021546848.1 | fimbrial biogenesis usher protein | - |
| ACHOXR_RS14485 (ACHOXR_14485) | elfD | 2934638..2935339 (-) | 702 | WP_072158272.1 | molecular chaperone | - |
| ACHOXR_RS14490 (ACHOXR_14490) | elfA | 2935422..2935961 (-) | 540 | WP_000750293.1 | fimbrial protein | - |
| ACHOXR_RS14495 (ACHOXR_14495) | ssuE | 2936317..2936892 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| ACHOXR_RS14500 (ACHOXR_14500) | ssuA | 2936885..2937844 (+) | 960 | WP_001244342.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| ACHOXR_RS14505 (ACHOXR_14505) | ssuD | 2937841..2938986 (+) | 1146 | WP_000056006.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=1065262 ACHOXR_RS14380 WP_000839153.1 2911234..2911863(-) (sxy/tfoX) [Escherichia coli strain QL57EC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=1065262 ACHOXR_RS14380 WP_000839153.1 2911234..2911863(-) (sxy/tfoX) [Escherichia coli strain QL57EC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |